Inter-comparison of marine microbiome sampling protocols

17 pages, 10 figures, supplementary data https://doi.org/10.1038/s43705-023-00278-w.-- Data Availability: All raw sequences from the EMOSE dataset, which includes all data used in this article, are available in the European Nucleotide Archive under the accession number ERP090011. The abundance tables are available at MGnify platform under accession number MGYS00001935. Note that both Versions 5 and 4.1 include all sequencing strategies (MetaB16SV4V5, MetaB18SV9 and metagenomes). The metadata for each sample database was recorded in PANGEA [71], but a cleaner version is available at Supplementary Table S2. The R scripts for all data manipulation, statistical tests and figures is available in github (https://github.com/pascoalf/Inter-comparison-of-marine-microbiome-sampling-protocols), no manipulation of data was done outside the scripts provided, except for manual curation of taxonomy, because it needs human experts’ evaluation

Bibliographic Details

Main Authors:	Pascoal, Francisco, Tomasino, Maria Paola, Piredda, Roberta, Quero, Grazia Marina, Torgo, Luís, Poulain, Julie, Galand, Pierre E., Fuhrman, Jed A., Mitchell, Alex, Tinta, Tinkara, Turk Dermastia, Timotej, Fernández-Guerra, Antonio, Vezzi, Alessandro, Logares, Ramiro, Malfatti, Francesca, Endo, Hisashi, Dąbrowska, Anna Maria, De Pascale, Fabio, Sánchez Fernández, Pablo, Henry, Nicolas, Fosso, Bruno, Wilson, Brian, Toshchakov, Stepan V., Ferrant, Gregory Kevin, Grigorov, Ivo, Rocha Jimenez Vieira, Fabio, Costa, Rodrigo, Pesant, Stéphane, Magalhães, Catarina M.
Other Authors:	Agencia Estatal de Investigación (España)
Format:	artículo biblioteca
Language:	English
Published:	International Society for Microbial Ecology 2023-12
Subjects:	Conserve and sustainably use the oceans, seas and marine resources for sustainable development,
Online Access:	http://hdl.handle.net/10261/354925
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