A gene-transcription factor network associated with residual feed intake based on SNVs/InDels identified in Gir, Girolando and Holstein cattle breeds.

VERARDO, L. L.; STAFUZZA, N. B.; MUNARI, D. P.; ZERLOTINI NETO, A.; CHUD, T. C. S.; GARRICK, D. J.; COLE, J. B.; PANETTO, J. C. do C.; MACHADO, M. A.; MARTINS, M. F.; SILVA, M. V. G. B.; L. L. VERARDO, Unesp; NEDENIA BONVINO STAFUZZA, Unesp; D. P. Munardi, Universidade Estadual Paulista; ADHEMAR ZERLOTINI NETO, CNPTIA; T. C. S. CHUD, Unesp; D. J. GARRICK, Massey University; J. B. COLE, USDA-ARS; JOAO CLAUDIO DO CARMO PANETTO, CNPGL; MARCO ANTONIO MACHADO, CNPGL; MARTA FONSECA MARTINS, CNPGL; MARCOS VINICIUS GUALBERTO B SILVA, CNPGL.

A gene-transcription factor network associated with residual feed intake based on SNVs/InDels identified in Gir, Girolando and Holstein cattle breeds.

The aim of this study was to analyze whole-genome re-sequencing data focusing on SNVs and InDels identified in Gir, Girolando and Holstein cattle breeds related to RFI. Thus, genes showing SNVs/InDels in TF binding sites (5' UTR variants) were used to search for TF related to feed intake and to generate a gene-TF network for RFI across two purebred and one admixed dairy cattle breeds. Moreover, we were able to perform a comparative analysis accessing similarities and dissimilarities at the genomic level across these breeds.

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Detalhes bibliográficos
Principais autores:	VERARDO, L. L., STAFUZZA, N. B., MUNARI, D. P., ZERLOTINI NETO, A., CHUD, T. C. S., GARRICK, D. J., COLE, J. B., PANETTO, J. C. do C., MACHADO, M. A., MARTINS, M. F., SILVA, M. V. G. B.
Outros Autores:	L. L. VERARDO, Unesp; NEDENIA BONVINO STAFUZZA, Unesp; D. P. Munardi, Universidade Estadual Paulista; ADHEMAR ZERLOTINI NETO, CNPTIA; T. C. S. CHUD, Unesp; D. J. GARRICK, Massey University; J. B. COLE, USDA-ARS; JOAO CLAUDIO DO CARMO PANETTO, CNPGL; MARCO ANTONIO MACHADO, CNPGL; MARTA FONSECA MARTINS, CNPGL; MARCOS VINICIUS GUALBERTO B SILVA, CNPGL.
Formato:	Anais e Proceedings de eventos biblioteca
Idioma:	English eng
Publicado em:	2019-02-05
Assuntos:	Sequência de dados, Single Nucleotide Variations (SNVs), Insertions/deletions (InDels), Whole-genome, Whole-genome re-sequencing data, Gado de Corte, Bos Indicus, Variação Genética, Cattle breeds,
Acesso em linha:	http://www.alice.cnptia.embrapa.br/alice/handle/doc/1105518
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id	dig-alice-doc-1105518
record_format	koha
spelling	dig-alice-doc-11055182019-02-05T23:44:14Z A gene-transcription factor network associated with residual feed intake based on SNVs/InDels identified in Gir, Girolando and Holstein cattle breeds. VERARDO, L. L. STAFUZZA, N. B. MUNARI, D. P. ZERLOTINI NETO, A. CHUD, T. C. S. GARRICK, D. J. COLE, J. B. PANETTO, J. C. do C. MACHADO, M. A. MARTINS, M. F. SILVA, M. V. G. B. L. L. VERARDO, Unesp; NEDENIA BONVINO STAFUZZA, Unesp; D. P. Munardi, Universidade Estadual Paulista; ADHEMAR ZERLOTINI NETO, CNPTIA; T. C. S. CHUD, Unesp; D. J. GARRICK, Massey University; J. B. COLE, USDA-ARS; JOAO CLAUDIO DO CARMO PANETTO, CNPGL; MARCO ANTONIO MACHADO, CNPGL; MARTA FONSECA MARTINS, CNPGL; MARCOS VINICIUS GUALBERTO B SILVA, CNPGL. Sequência de dados Single Nucleotide Variations (SNVs) Insertions/deletions (InDels) Whole-genome Whole-genome re-sequencing data Gado de Corte Bos Indicus Variação Genética Cattle breeds The aim of this study was to analyze whole-genome re-sequencing data focusing on SNVs and InDels identified in Gir, Girolando and Holstein cattle breeds related to RFI. Thus, genes showing SNVs/InDels in TF binding sites (5' UTR variants) were used to search for TF related to feed intake and to generate a gene-TF network for RFI across two purebred and one admixed dairy cattle breeds. Moreover, we were able to perform a comparative analysis accessing similarities and dissimilarities at the genomic level across these breeds. Na publicação: A. Zerlotini, J. C. C. Panetto. WCGALP 2018. 2019-02-05T23:44:07Z 2019-02-05T23:44:07Z 2019-02-05 2018 2020-01-21T11:11:11Z Anais e Proceedings de eventos In: WORLD CONGRESS ON GENETICS APPLIED TO LIVESTOCK PRODUCTION, 11., 2018, Auckland. Proceedings... [S.l.: s.n.], 2018. http://www.alice.cnptia.embrapa.br/alice/handle/doc/1105518 en eng openAccess 6 p.
institution	EMBRAPA
collection	DSpace
country	Brasil
countrycode	BR
component	Bibliográfico
access	En linea
databasecode	dig-alice
tag	biblioteca
region	America del Sur
libraryname	Sistema de bibliotecas de EMBRAPA
language	English eng
topic	Sequência de dados Single Nucleotide Variations (SNVs) Insertions/deletions (InDels) Whole-genome Whole-genome re-sequencing data Gado de Corte Bos Indicus Variação Genética Cattle breeds Sequência de dados Single Nucleotide Variations (SNVs) Insertions/deletions (InDels) Whole-genome Whole-genome re-sequencing data Gado de Corte Bos Indicus Variação Genética Cattle breeds
spellingShingle	Sequência de dados Single Nucleotide Variations (SNVs) Insertions/deletions (InDels) Whole-genome Whole-genome re-sequencing data Gado de Corte Bos Indicus Variação Genética Cattle breeds Sequência de dados Single Nucleotide Variations (SNVs) Insertions/deletions (InDels) Whole-genome Whole-genome re-sequencing data Gado de Corte Bos Indicus Variação Genética Cattle breeds VERARDO, L. L. STAFUZZA, N. B. MUNARI, D. P. ZERLOTINI NETO, A. CHUD, T. C. S. GARRICK, D. J. COLE, J. B. PANETTO, J. C. do C. MACHADO, M. A. MARTINS, M. F. SILVA, M. V. G. B. A gene-transcription factor network associated with residual feed intake based on SNVs/InDels identified in Gir, Girolando and Holstein cattle breeds.
description	The aim of this study was to analyze whole-genome re-sequencing data focusing on SNVs and InDels identified in Gir, Girolando and Holstein cattle breeds related to RFI. Thus, genes showing SNVs/InDels in TF binding sites (5' UTR variants) were used to search for TF related to feed intake and to generate a gene-TF network for RFI across two purebred and one admixed dairy cattle breeds. Moreover, we were able to perform a comparative analysis accessing similarities and dissimilarities at the genomic level across these breeds.
author2	L. L. VERARDO, Unesp; NEDENIA BONVINO STAFUZZA, Unesp; D. P. Munardi, Universidade Estadual Paulista; ADHEMAR ZERLOTINI NETO, CNPTIA; T. C. S. CHUD, Unesp; D. J. GARRICK, Massey University; J. B. COLE, USDA-ARS; JOAO CLAUDIO DO CARMO PANETTO, CNPGL; MARCO ANTONIO MACHADO, CNPGL; MARTA FONSECA MARTINS, CNPGL; MARCOS VINICIUS GUALBERTO B SILVA, CNPGL.
author_facet	L. L. VERARDO, Unesp; NEDENIA BONVINO STAFUZZA, Unesp; D. P. Munardi, Universidade Estadual Paulista; ADHEMAR ZERLOTINI NETO, CNPTIA; T. C. S. CHUD, Unesp; D. J. GARRICK, Massey University; J. B. COLE, USDA-ARS; JOAO CLAUDIO DO CARMO PANETTO, CNPGL; MARCO ANTONIO MACHADO, CNPGL; MARTA FONSECA MARTINS, CNPGL; MARCOS VINICIUS GUALBERTO B SILVA, CNPGL. VERARDO, L. L. STAFUZZA, N. B. MUNARI, D. P. ZERLOTINI NETO, A. CHUD, T. C. S. GARRICK, D. J. COLE, J. B. PANETTO, J. C. do C. MACHADO, M. A. MARTINS, M. F. SILVA, M. V. G. B.
format	Anais e Proceedings de eventos
topic_facet	Sequência de dados Single Nucleotide Variations (SNVs) Insertions/deletions (InDels) Whole-genome Whole-genome re-sequencing data Gado de Corte Bos Indicus Variação Genética Cattle breeds
author	VERARDO, L. L. STAFUZZA, N. B. MUNARI, D. P. ZERLOTINI NETO, A. CHUD, T. C. S. GARRICK, D. J. COLE, J. B. PANETTO, J. C. do C. MACHADO, M. A. MARTINS, M. F. SILVA, M. V. G. B.
author_sort	VERARDO, L. L.
title	A gene-transcription factor network associated with residual feed intake based on SNVs/InDels identified in Gir, Girolando and Holstein cattle breeds.
title_short	A gene-transcription factor network associated with residual feed intake based on SNVs/InDels identified in Gir, Girolando and Holstein cattle breeds.
title_full	A gene-transcription factor network associated with residual feed intake based on SNVs/InDels identified in Gir, Girolando and Holstein cattle breeds.
title_fullStr	A gene-transcription factor network associated with residual feed intake based on SNVs/InDels identified in Gir, Girolando and Holstein cattle breeds.
title_full_unstemmed	A gene-transcription factor network associated with residual feed intake based on SNVs/InDels identified in Gir, Girolando and Holstein cattle breeds.
title_sort	gene-transcription factor network associated with residual feed intake based on snvs/indels identified in gir, girolando and holstein cattle breeds.
publishDate	2019-02-05
url	http://www.alice.cnptia.embrapa.br/alice/handle/doc/1105518
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A gene-transcription factor network associated with residual feed intake based on SNVs/InDels identified in Gir, Girolando and Holstein cattle breeds.

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