A gene-transcription factor network associated with residual feed intake based on SNVs/InDels identified in Gir, Girolando and Holstein cattle breeds.

A gene-transcription factor network associated with residual feed intake based on SNVs/InDels identified in Gir, Girolando and Holstein cattle breeds.

The aim of this study was to analyze whole-genome re-sequencing data focusing on SNVs and InDels identified in Gir, Girolando and Holstein cattle breeds related to RFI. Thus, genes showing SNVs/InDels in TF binding sites (5' UTR variants) were used to search for TF related to feed intake and to generate a gene-TF network for RFI across two purebred and one admixed dairy cattle breeds. Moreover, we were able to perform a comparative analysis accessing similarities and dissimilarities at the genomic level across these breeds.

Saved in:
Bibliographic Details
Main Authors: VERARDO, L. L., STAFUZZA, N. B., MUNARI, D. P., ZERLOTINI NETO, A., CHUD, T. C. S., GARRICK, D. J., COLE, J. B., PANETTO, J. C. do C., MACHADO, M. A., MARTINS, M. F., SILVA, M. V. G. B.
Other Authors: L. L. VERARDO, Unesp; NEDENIA BONVINO STAFUZZA, Unesp; D. P. Munardi, Universidade Estadual Paulista; ADHEMAR ZERLOTINI NETO, CNPTIA; T. C. S. CHUD, Unesp; D. J. GARRICK, Massey University; J. B. COLE, USDA-ARS; JOAO CLAUDIO DO CARMO PANETTO, CNPGL; MARCO ANTONIO MACHADO, CNPGL; MARTA FONSECA MARTINS, CNPGL; MARCOS VINICIUS GUALBERTO B SILVA, CNPGL.
Format: Anais e Proceedings de eventos biblioteca
Language:English
eng
Published: 2019-02-05
Subjects:Sequência de dados, Single Nucleotide Variations (SNVs), Insertions/deletions (InDels), Whole-genome, Whole-genome re-sequencing data, Gado de Corte, Bos Indicus, Variação Genética, Cattle breeds,
Online Access:http://www.alice.cnptia.embrapa.br/alice/handle/doc/1105518
Tags: Add Tag
No Tags, Be the first to tag this record!

Internet

http://www.alice.cnptia.embrapa.br/alice/handle/doc/1105518

Similar Items