Ephemera danica Official Gene Set ephdan_OGSv1.0

<p>This dataset presents the <em>Ephemera danica</em> Official Gene Set (OGS) v1.0. The OGS is an integration of automatic gene predictions from <a href="https://10.15482/USDA.ADC/1503792"><em>Ephemera danica</em> genome annotations v0.5.3</a>, with <a href="https://data.nal.usda.gov/dataset/ephemera-danica-manual-annotations-genome-assembly-edan10">manual annotations by the research community</a>, performed via the <a href="http://genomearchitect.org/">Apollo manual curation software</a>. Manual and automated annotations were lifted over from genome assembly <a href="https://10.15482/USDA.ADC/1503791"><em>Ephemera danica</em> genome assembly v1.0</a> to genome assembly <a href="https://www.ncbi.nlm.nih.gov/assembly/GCA_000507165.2">Edan_2.0</a> using the <a href="https://github.com/NAL-i5K/coordinates_conversion">coordinates_conversion</a> and <a href="https://github.com/NAL-i5K/remap-gff3">remap-gff3 programs</a>. </p> <div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Ephemera danica Official Gene Set ephdan_OGSv1.0.</p> <p>File Name: ephdan_OGSv1.0.tar.gz</p><p>Resource Description: The attached tar.gz archive (ephdan_OGSv1.0.tar.gz) contains the following files: ephdan_OGSv1.0.gff. Gff3 of all gene predictions of Ephemera danica genome annotations OGSv1.0 ephdan_OGSv1.0_cds.fa. CDS sequences of Ephemera danica genome annotations OGSv1.0 ephdan_OGSv1.0_pep.fa. Amino acid sequences of Ephemera danica genome annotations OGSv1.0 ephdan_OGSv1.0_trans.fa. Transcript sequences of Ephemera danica genome annotations OGSv1.0 ID_map_report.txt. A file containing ID mappings between Ephemera danica genome annotations v0.5.3 and Ephemera danica Official Gene Set ephdan_OGSv1.0 deleted_models.txt. A file containing IDs and names of models removed from Ephemera danica genome annotations v0.5.3 and Ephemera danica manual annotations on genome assembly Edan_1.0 during the creation of Ephemera danica Official Gene Set ephdan_OGSv1.0</p></li></ul>

Detalles Bibliográficos

Autores principales:	Panagiotis Provataris (7004882), Hugh M. Robertson (17478090), Jeffery Jones (3401468), Oliver Niehuis (8929517), Agnes Southgate (17482134), Seung-Joon Ahn (17479089), Li-Mei Chiang (3944798), Monica Poelchau (17477901), Daniel S.T. Hughes (5011685), Stephen Richards (17476059)
Formato:	Dataset biblioteca
Publicado:	2020
Materias:	Genomics and transcriptomics, Genetics, genome annotation, Ephemera danica,
Acceso en línea:	https://figshare.com/articles/dataset/Ephemera_danica_Official_Gene_Set_ephdan_OGSv1_0/24853563
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