CottonGen CottonCyc Pathways Database
<p>The CottonGen CottonCyc Pathways Database, part of CottonGen, supports searching and browsing the following CottonCyc databases:</p> <ul> <li>Cyc pathways for JGI v2.0 <em>G. raimondii</em> D5 genome assembly</li> </ul> <p>This Cyc database was constructed using PathwayTools version 20.0 using the gene models from the JGI v2.0 D5 genome assembly of <em>Gossypium raimondii</em>. There has been no manual curation of this Cyc database. Pathway predictions were made using PathwayTools and in-silico v2.1 annotations as provided by JGI.</p> <ul> <li>Cyc pathways for CGP-BGI v1.0 <em>G. hirsutum</em> AD1 genome assembly</li> </ul> <p>This Cyc database was constructed using PathwayTools version 20.0 using the gene models from the CGP-BGI v1.0 AD1 genome assembly of <em>Gossypium hirsutum</em>. There has been no manual curation of this Cyc database. Pathway predictions were made using PathwayTools and in-silico v1.0 annotations as provided by CGP-BGI.</p> <p>Search parameters include genes, proteins, RNAs, compounds, reactions, pathways, growth media, and BLAST search. </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Website Pointer to CottonGen CottonCyc Pathways Database.</p> <p>File Name: Web Page, url: <a href="http://ptools.cottongen.org/">http://ptools.cottongen.org/</a> </p></li></ul><p></p>
| Main Authors: | , , , , , , , |
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| Format: | Dataset biblioteca |
| Published: |
2019
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| Subjects: | Crop and pasture production, Genetics, Plant biology not elsewhere classified, CottonGen, CottonDB, Cotton Marker Database, Tripal database, GBrowse, CMap, NCBI BLAST, NP301, Online database, data.gov, ARS, |
| Online Access: | https://figshare.com/articles/dataset/CottonGen_CottonCyc_Pathways_Database/24853212 |
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