Leaf count overdispersion in coffee seedlings

ABSTRACT: Coffee crops play an important role in Brazilian agriculture, with a high level of social and economic participation resulting from the jobs created in the supply chain and from the income obtained by producers and the revenue generated for the country from coffee bean export. In coffee plant growth, leaves have a determinant role in higher production; therefore, the leaf count per plant provides relevant information to producers for adequate crop management, such as foliar fertilizer applications. To describe count data, the Poisson model is the most commonly employed model; when count data show overdispersion, the negative binomial model has been determined to be more adequate. The objective of this study was to compare the fitness of the Poisson and negative binomial models to data on the leaf count per plant in coffee seedlings. Data were collected from an experiment with a randomized block design with 30 treatments and three replicates and four plants per plot. Data from only one treatment, in which the number of leaves was counted over time, were employed. The first count was conducted on 8 April 2016, and the other counts were performed 18, 32, 47, 62, 76, 95, 116, 133, and 153 days after the first evaluation, for a total of ten measurements. The fitness of the models was assessed based on deviance values and simulated envelopes for residuals. Results of fitness assessment indicated that the Poisson model was inadequate for describing the data due to overdispersion. The negative binomial model adequately fitted the observations and was indicated to describe the number of leaves of coffee plants. Based on the negative binomial model, the expected relative increase in the number of leaves was 0.9768% per day.

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Main Authors: Silva,Edilson Marcelino, Furtado,Thais Destefani Ribeiro, Fernandes,Jaqueline Gonçalves, Cirillo,Marcelo Ângelo, Muniz,Joel Augusto
Format: Digital revista
Language:English
Published: Universidade Federal de Santa Maria 2019
Online Access:http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-84782019000400201
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spelling oai:scielo:S0103-847820190004002012019-04-03Leaf count overdispersion in coffee seedlingsSilva,Edilson MarcelinoFurtado,Thais Destefani RibeiroFernandes,Jaqueline GonçalvesCirillo,Marcelo ÂngeloMuniz,Joel Augusto Poisson model negative binomial model exponential family generalized linear model ABSTRACT: Coffee crops play an important role in Brazilian agriculture, with a high level of social and economic participation resulting from the jobs created in the supply chain and from the income obtained by producers and the revenue generated for the country from coffee bean export. In coffee plant growth, leaves have a determinant role in higher production; therefore, the leaf count per plant provides relevant information to producers for adequate crop management, such as foliar fertilizer applications. To describe count data, the Poisson model is the most commonly employed model; when count data show overdispersion, the negative binomial model has been determined to be more adequate. The objective of this study was to compare the fitness of the Poisson and negative binomial models to data on the leaf count per plant in coffee seedlings. Data were collected from an experiment with a randomized block design with 30 treatments and three replicates and four plants per plot. Data from only one treatment, in which the number of leaves was counted over time, were employed. The first count was conducted on 8 April 2016, and the other counts were performed 18, 32, 47, 62, 76, 95, 116, 133, and 153 days after the first evaluation, for a total of ten measurements. The fitness of the models was assessed based on deviance values and simulated envelopes for residuals. Results of fitness assessment indicated that the Poisson model was inadequate for describing the data due to overdispersion. The negative binomial model adequately fitted the observations and was indicated to describe the number of leaves of coffee plants. Based on the negative binomial model, the expected relative increase in the number of leaves was 0.9768% per day.info:eu-repo/semantics/openAccessUniversidade Federal de Santa MariaCiência Rural v.49 n.4 20192019-01-01info:eu-repo/semantics/articletext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-84782019000400201en10.1590/0103-8478cr20180786
institution SCIELO
collection OJS
country Brasil
countrycode BR
component Revista
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databasecode rev-scielo-br
tag revista
region America del Sur
libraryname SciELO
language English
format Digital
author Silva,Edilson Marcelino
Furtado,Thais Destefani Ribeiro
Fernandes,Jaqueline Gonçalves
Cirillo,Marcelo Ângelo
Muniz,Joel Augusto
spellingShingle Silva,Edilson Marcelino
Furtado,Thais Destefani Ribeiro
Fernandes,Jaqueline Gonçalves
Cirillo,Marcelo Ângelo
Muniz,Joel Augusto
Leaf count overdispersion in coffee seedlings
author_facet Silva,Edilson Marcelino
Furtado,Thais Destefani Ribeiro
Fernandes,Jaqueline Gonçalves
Cirillo,Marcelo Ângelo
Muniz,Joel Augusto
author_sort Silva,Edilson Marcelino
title Leaf count overdispersion in coffee seedlings
title_short Leaf count overdispersion in coffee seedlings
title_full Leaf count overdispersion in coffee seedlings
title_fullStr Leaf count overdispersion in coffee seedlings
title_full_unstemmed Leaf count overdispersion in coffee seedlings
title_sort leaf count overdispersion in coffee seedlings
description ABSTRACT: Coffee crops play an important role in Brazilian agriculture, with a high level of social and economic participation resulting from the jobs created in the supply chain and from the income obtained by producers and the revenue generated for the country from coffee bean export. In coffee plant growth, leaves have a determinant role in higher production; therefore, the leaf count per plant provides relevant information to producers for adequate crop management, such as foliar fertilizer applications. To describe count data, the Poisson model is the most commonly employed model; when count data show overdispersion, the negative binomial model has been determined to be more adequate. The objective of this study was to compare the fitness of the Poisson and negative binomial models to data on the leaf count per plant in coffee seedlings. Data were collected from an experiment with a randomized block design with 30 treatments and three replicates and four plants per plot. Data from only one treatment, in which the number of leaves was counted over time, were employed. The first count was conducted on 8 April 2016, and the other counts were performed 18, 32, 47, 62, 76, 95, 116, 133, and 153 days after the first evaluation, for a total of ten measurements. The fitness of the models was assessed based on deviance values and simulated envelopes for residuals. Results of fitness assessment indicated that the Poisson model was inadequate for describing the data due to overdispersion. The negative binomial model adequately fitted the observations and was indicated to describe the number of leaves of coffee plants. Based on the negative binomial model, the expected relative increase in the number of leaves was 0.9768% per day.
publisher Universidade Federal de Santa Maria
publishDate 2019
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0103-84782019000400201
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AT fernandesjaquelinegoncalves leafcountoverdispersionincoffeeseedlings
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