Connecting Discrete Stereoclusters by Using DFT and NMR Spectroscopy: The Case of Nivariol

The structural determination of small organic molecules is mainly undertaken by using NMR techniques, although it is increasingly supplemented by using computational methods. NMR parameters, such as chemical shifts and coupling constants, are extremely sensitive indicators of local molecular conformation and are a source of structural evidence. However, their interpretation is fairly challenging in many circumstances, such as the case of the new polyether squalene derivative nivariol, the structure of which was elucidated by means of NMR spectroscopy and DFT calculations. The potential flexibility of this molecule and the high number of quaternary carbon atoms that it contains make its configurational assignment very difficult. Moreover, the relative configuration of four separated stereoclusters was established and subsequently connected by using NOE and J ‐based analysis, as well as by a comparison of its experimental 13C NMR chemical shifts with the corresponding population‐weighted values, as calculated by using DFT methods. Limitations of these used approaches became apparent but were overcome by combining the two methods.

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Main Authors: Cen‐Pacheco, Francisco, Rodríguez, Jaime, Norte, Manuel, Fernández, José J., Hernández Daranas, Antonio
Other Authors: Centro de Supercomputación de Galicia
Format: artículo biblioteca
Language:English
Published: Wiley-VCH 2013-06-24
Subjects:Cluster compounds, Conformational analysis, Density functional calculations, NMR spectroscopy, Natural products,
Online Access:http://hdl.handle.net/10261/213248
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spelling dig-ipna-es-10261-2132482020-06-04T08:06:10Z Connecting Discrete Stereoclusters by Using DFT and NMR Spectroscopy: The Case of Nivariol Cen‐Pacheco, Francisco Rodríguez, Jaime Norte, Manuel Fernández, José J. Hernández Daranas, Antonio Centro de Supercomputación de Galicia Cluster compounds Conformational analysis Density functional calculations NMR spectroscopy Natural products The structural determination of small organic molecules is mainly undertaken by using NMR techniques, although it is increasingly supplemented by using computational methods. NMR parameters, such as chemical shifts and coupling constants, are extremely sensitive indicators of local molecular conformation and are a source of structural evidence. However, their interpretation is fairly challenging in many circumstances, such as the case of the new polyether squalene derivative nivariol, the structure of which was elucidated by means of NMR spectroscopy and DFT calculations. The potential flexibility of this molecule and the high number of quaternary carbon atoms that it contains make its configurational assignment very difficult. Moreover, the relative configuration of four separated stereoclusters was established and subsequently connected by using NOE and J ‐based analysis, as well as by a comparison of its experimental 13C NMR chemical shifts with the corresponding population‐weighted values, as calculated by using DFT methods. Limitations of these used approaches became apparent but were overcome by combining the two methods. Peer reviewed 2020-06-03T14:58:51Z 2020-06-03T14:58:51Z 2013-06-24 artículo http://purl.org/coar/resource_type/c_6501 Chemistry - a European Journal 19(26): 8525-8532 (2013) 0947-6539 http://hdl.handle.net/10261/213248 10.1002/chem.201204272 1521-3765 en Postprint https://doi.org/10.1002/chem.201204272 No none Wiley-VCH
institution IPNA ES
collection DSpace
country España
countrycode ES
component Bibliográfico
access En linea
databasecode dig-ipna-es
tag biblioteca
region Europa del Sur
libraryname Biblioteca del IPNA España
language English
topic Cluster compounds
Conformational analysis
Density functional calculations
NMR spectroscopy
Natural products
Cluster compounds
Conformational analysis
Density functional calculations
NMR spectroscopy
Natural products
spellingShingle Cluster compounds
Conformational analysis
Density functional calculations
NMR spectroscopy
Natural products
Cluster compounds
Conformational analysis
Density functional calculations
NMR spectroscopy
Natural products
Cen‐Pacheco, Francisco
Rodríguez, Jaime
Norte, Manuel
Fernández, José J.
Hernández Daranas, Antonio
Connecting Discrete Stereoclusters by Using DFT and NMR Spectroscopy: The Case of Nivariol
description The structural determination of small organic molecules is mainly undertaken by using NMR techniques, although it is increasingly supplemented by using computational methods. NMR parameters, such as chemical shifts and coupling constants, are extremely sensitive indicators of local molecular conformation and are a source of structural evidence. However, their interpretation is fairly challenging in many circumstances, such as the case of the new polyether squalene derivative nivariol, the structure of which was elucidated by means of NMR spectroscopy and DFT calculations. The potential flexibility of this molecule and the high number of quaternary carbon atoms that it contains make its configurational assignment very difficult. Moreover, the relative configuration of four separated stereoclusters was established and subsequently connected by using NOE and J ‐based analysis, as well as by a comparison of its experimental 13C NMR chemical shifts with the corresponding population‐weighted values, as calculated by using DFT methods. Limitations of these used approaches became apparent but were overcome by combining the two methods.
author2 Centro de Supercomputación de Galicia
author_facet Centro de Supercomputación de Galicia
Cen‐Pacheco, Francisco
Rodríguez, Jaime
Norte, Manuel
Fernández, José J.
Hernández Daranas, Antonio
format artículo
topic_facet Cluster compounds
Conformational analysis
Density functional calculations
NMR spectroscopy
Natural products
author Cen‐Pacheco, Francisco
Rodríguez, Jaime
Norte, Manuel
Fernández, José J.
Hernández Daranas, Antonio
author_sort Cen‐Pacheco, Francisco
title Connecting Discrete Stereoclusters by Using DFT and NMR Spectroscopy: The Case of Nivariol
title_short Connecting Discrete Stereoclusters by Using DFT and NMR Spectroscopy: The Case of Nivariol
title_full Connecting Discrete Stereoclusters by Using DFT and NMR Spectroscopy: The Case of Nivariol
title_fullStr Connecting Discrete Stereoclusters by Using DFT and NMR Spectroscopy: The Case of Nivariol
title_full_unstemmed Connecting Discrete Stereoclusters by Using DFT and NMR Spectroscopy: The Case of Nivariol
title_sort connecting discrete stereoclusters by using dft and nmr spectroscopy: the case of nivariol
publisher Wiley-VCH
publishDate 2013-06-24
url http://hdl.handle.net/10261/213248
work_keys_str_mv AT cenpachecofrancisco connectingdiscretestereoclustersbyusingdftandnmrspectroscopythecaseofnivariol
AT rodriguezjaime connectingdiscretestereoclustersbyusingdftandnmrspectroscopythecaseofnivariol
AT nortemanuel connectingdiscretestereoclustersbyusingdftandnmrspectroscopythecaseofnivariol
AT fernandezjosej connectingdiscretestereoclustersbyusingdftandnmrspectroscopythecaseofnivariol
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