Comparative genomics reveals the hybrid origin of a macaque group

Comparative genomics reveals the hybrid origin of a macaque group

© 2023 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC).

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Main Authors: Zhang, Bao-Lin, Chen, Wu, Wang, Zefu, Pang, Wei, Luo, Meng-Ting, Wang, Sheng, Shao, Yong, He, Wen-Qiang, Deng, Yuan, Zhou, Long, Chen, Jiawei, Yang, Min-Min, Wu, Yajiang, Wang, Lu, Fernández-Bellón, Hugo, Molloy, Sandra, Meunier, Hélène, Wanert, Fanélie, Kuderna, Lukas F. K., Marqués-Bonet, Tomàs, Roos, Christian, Qi, Xiao-Guang, Li, Ming, Liu, Zhijin, Schierup, Mikkel Heide, Cooper, David N., Liu, Jianquan, Zheng, Yong-Tang, Zhang, Guojie, Wu, Dong-Dong
Other Authors: National Key Research and Development Program (China)
Format: artículo biblioteca
Language:English
Published: American Association for the Advancement of Science 2023-06-02
Online Access:http://hdl.handle.net/10261/347818
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libraryname Biblioteca del IBE España
language English
description © 2023 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC).
author2 National Key Research and Development Program (China)
author_facet National Key Research and Development Program (China)
Zhang, Bao-Lin
Chen, Wu
Wang, Zefu
Pang, Wei
Luo, Meng-Ting
Wang, Sheng
Shao, Yong
He, Wen-Qiang
Deng, Yuan
Zhou, Long
Chen, Jiawei
Yang, Min-Min
Wu, Yajiang
Wang, Lu
Fernández-Bellón, Hugo
Molloy, Sandra
Meunier, Hélène
Wanert, Fanélie
Kuderna, Lukas F. K.
Marqués-Bonet, Tomàs
Roos, Christian
Qi, Xiao-Guang
Li, Ming
Liu, Zhijin
Schierup, Mikkel Heide
Cooper, David N.
Liu, Jianquan
Zheng, Yong-Tang
Zhang, Guojie
Wu, Dong-Dong
format artículo
author Zhang, Bao-Lin
Chen, Wu
Wang, Zefu
Pang, Wei
Luo, Meng-Ting
Wang, Sheng
Shao, Yong
He, Wen-Qiang
Deng, Yuan
Zhou, Long
Chen, Jiawei
Yang, Min-Min
Wu, Yajiang
Wang, Lu
Fernández-Bellón, Hugo
Molloy, Sandra
Meunier, Hélène
Wanert, Fanélie
Kuderna, Lukas F. K.
Marqués-Bonet, Tomàs
Roos, Christian
Qi, Xiao-Guang
Li, Ming
Liu, Zhijin
Schierup, Mikkel Heide
Cooper, David N.
Liu, Jianquan
Zheng, Yong-Tang
Zhang, Guojie
Wu, Dong-Dong
spellingShingle Zhang, Bao-Lin
Chen, Wu
Wang, Zefu
Pang, Wei
Luo, Meng-Ting
Wang, Sheng
Shao, Yong
He, Wen-Qiang
Deng, Yuan
Zhou, Long
Chen, Jiawei
Yang, Min-Min
Wu, Yajiang
Wang, Lu
Fernández-Bellón, Hugo
Molloy, Sandra
Meunier, Hélène
Wanert, Fanélie
Kuderna, Lukas F. K.
Marqués-Bonet, Tomàs
Roos, Christian
Qi, Xiao-Guang
Li, Ming
Liu, Zhijin
Schierup, Mikkel Heide
Cooper, David N.
Liu, Jianquan
Zheng, Yong-Tang
Zhang, Guojie
Wu, Dong-Dong
Comparative genomics reveals the hybrid origin of a macaque group
author_sort Zhang, Bao-Lin
title Comparative genomics reveals the hybrid origin of a macaque group
title_short Comparative genomics reveals the hybrid origin of a macaque group
title_full Comparative genomics reveals the hybrid origin of a macaque group
title_fullStr Comparative genomics reveals the hybrid origin of a macaque group
title_full_unstemmed Comparative genomics reveals the hybrid origin of a macaque group
title_sort comparative genomics reveals the hybrid origin of a macaque group
publisher American Association for the Advancement of Science
publishDate 2023-06-02
url http://hdl.handle.net/10261/347818
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spelling dig-ibe-es-10261-3478182024-02-21T13:11:47Z Comparative genomics reveals the hybrid origin of a macaque group Zhang, Bao-Lin Chen, Wu Wang, Zefu Pang, Wei Luo, Meng-Ting Wang, Sheng Shao, Yong He, Wen-Qiang Deng, Yuan Zhou, Long Chen, Jiawei Yang, Min-Min Wu, Yajiang Wang, Lu Fernández-Bellón, Hugo Molloy, Sandra Meunier, Hélène Wanert, Fanélie Kuderna, Lukas F. K. Marqués-Bonet, Tomàs Roos, Christian Qi, Xiao-Guang Li, Ming Liu, Zhijin Schierup, Mikkel Heide Cooper, David N. Liu, Jianquan Zheng, Yong-Tang Zhang, Guojie Wu, Dong-Dong National Key Research and Development Program (China) National Natural Science Foundation of China Yunnan Province Chinese Academy of Sciences Villum Fonden European Research Council European Commission Howard Hughes Medical Institute Ministerio de Ciencia, Innovación y Universidades (España) Agencia Estatal de Investigación (España) Marqués-Bonet, Tomàs [0000-0002-5597-3075] © 2023 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC). Although species can arise through hybridization, compelling evidence for hybrid speciation has been reported only rarely in animals. Here, we present phylogenomic analyses on genomes from 12 macaque species and show that the fascicularis group originated from an ancient hybridization between the sinica and silenus groups ~3.45 to 3.56 million years ago. The X chromosomes and low-recombination regions exhibited equal contributions from each parental lineage, suggesting that they were less affected by subsequent backcrossing and hence could have played an important role in maintaining hybrid integrity. We identified many reproduction-associated genes that could have contributed to the development of the mixed sexual phenotypes characteristic of the fascicularis group. The phylogeny within the silenus group was also resolved, and functional experimentation confirmed that all extant Western silenus species are susceptible to HIV-1 infection. Our study provides novel insights into macaque evolution and reveals a hybrid speciation event that has occurred only very rarely in primates. This work was funded by the National Key Research and Development Program of China (nos. 2021YFF0702700 and 2022YFF0710901), the National Natural Science Foundation of China (no. 31822048 to D.-D.W. and no. 32270500 to B.-L.Z.), Yunnan Applied Basic Research Projects (no. 2019FI010 to D.-D.W.), CAS Light of West China Program (xbzg-zdsys-202213) and the Animal Branch of the Germplasm Bank of Wild Species of Chinese Academy of Science (the Large Research Infrastructure Funding). This work was also partially supported by a Villum Investigator Grant to G.Z. (no. 25900) and the National Natural Science Foundation of China to Y.-T.Z. (U1802284). T.M.-B. was supported by funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (no. 864203), BFU2017-86471-P (MINECO/FEDER, UE), and Howard Hughes International Early Career. Peer reviewed 2024-02-21T10:33:09Z 2024-02-21T10:33:09Z 2023-06-02 artículo Science Advances 9(22): eadd3580 (2023) http://hdl.handle.net/10261/347818 10.1126/sciadv.add3580 2375-2548 en #PLACEHOLDER_PARENT_METADATA_VALUE# #PLACEHOLDER_PARENT_METADATA_VALUE# info:eu-repo/grantAgreement/EC/H2020/864203 info:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2013-2016/BFU2017-86471-P/ES/GEO-ESTRATIFICACION DE LA DIVERSIDAD GENOMICA EN GRANDES SIMIOS BASADO EN MUESTRAS NO INVASIVAS/ Publisher's version The underlying dataset has been published as supplementary material of the article in the publisher platform at https://doi.org/10.1126/sciadv.add3580 The raw sequencing data from this project were deposited in the Genome Warehouse (GWH) database under project accession number PRJCA007326. https://doi.org/10.1126/sciadv.add3580 Sí open application/pdf American Association for the Advancement of Science

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