SSDM : An R package to predict distribution of species richness and composition based on stacked species distribution models
There is growing interest among conservationists in biodiversity mapping based on stacked species distribution models (SSDMs), a method that combines multiple individual species distribution models to produce a community-level model. However, no user-friendly interface specifically designed to provide the basic tools needed to fit such models was available until now. The “ssdm” package is a computer platform implemented in r providing a range of methodological approaches and parameterisation at each step in building the SSDM: e.g. pseudo-absence selection, variable contribution and model accuracy assessment, inter-model consensus forecasting, species assembly design, and calculation of weighted endemism. The object-oriented design of the package is such that: users can modify existing methods, extend the framework by implementing new methods, and share them to be reproduced by others. The package includes a graphical user interface to extend the use of SSDMs to a wide range of conservation scientists and practitioners.
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Subjects: | P01 - Conservation de la nature et ressources foncières, U10 - Informatique, mathématiques et statistiques, F70 - Taxonomie végétale et phytogéographie, distribution des populations, modélisation, biodiversité, bioinformatique, logiciel, écologie animale, phytoécologie, écologie des populations, http://aims.fao.org/aos/agrovoc/c_6113, http://aims.fao.org/aos/agrovoc/c_230ab86c, http://aims.fao.org/aos/agrovoc/c_33949, http://aims.fao.org/aos/agrovoc/c_37958, http://aims.fao.org/aos/agrovoc/c_24008, http://aims.fao.org/aos/agrovoc/c_427, http://aims.fao.org/aos/agrovoc/c_5963, http://aims.fao.org/aos/agrovoc/c_37336, |
Online Access: | http://agritrop.cirad.fr/597712/ http://agritrop.cirad.fr/597712/1/597712.pdf |
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dig-cirad-fr-5977122024-01-29T03:22:08Z http://agritrop.cirad.fr/597712/ http://agritrop.cirad.fr/597712/ SSDM : An R package to predict distribution of species richness and composition based on stacked species distribution models. Schmitt Sylvain, Pouteau Robin, Justeau-Allaire Dimitri, De Boissieu Florian, Birnbaum Philippe. 2017. Methods in Ecology and Evolution, 8 (12) : 1795-1803.https://doi.org/10.1111/2041-210X.12841 <https://doi.org/10.1111/2041-210X.12841> SSDM : An R package to predict distribution of species richness and composition based on stacked species distribution models Schmitt, Sylvain Pouteau, Robin Justeau-Allaire, Dimitri De Boissieu, Florian Birnbaum, Philippe eng 2017 Methods in Ecology and Evolution P01 - Conservation de la nature et ressources foncières U10 - Informatique, mathématiques et statistiques F70 - Taxonomie végétale et phytogéographie distribution des populations modélisation biodiversité bioinformatique logiciel écologie animale phytoécologie écologie des populations http://aims.fao.org/aos/agrovoc/c_6113 http://aims.fao.org/aos/agrovoc/c_230ab86c http://aims.fao.org/aos/agrovoc/c_33949 http://aims.fao.org/aos/agrovoc/c_37958 http://aims.fao.org/aos/agrovoc/c_24008 http://aims.fao.org/aos/agrovoc/c_427 http://aims.fao.org/aos/agrovoc/c_5963 http://aims.fao.org/aos/agrovoc/c_37336 There is growing interest among conservationists in biodiversity mapping based on stacked species distribution models (SSDMs), a method that combines multiple individual species distribution models to produce a community-level model. However, no user-friendly interface specifically designed to provide the basic tools needed to fit such models was available until now. The “ssdm” package is a computer platform implemented in r providing a range of methodological approaches and parameterisation at each step in building the SSDM: e.g. pseudo-absence selection, variable contribution and model accuracy assessment, inter-model consensus forecasting, species assembly design, and calculation of weighted endemism. The object-oriented design of the package is such that: users can modify existing methods, extend the framework by implementing new methods, and share them to be reproduced by others. The package includes a graphical user interface to extend the use of SSDMs to a wide range of conservation scientists and practitioners. article info:eu-repo/semantics/article Journal Article info:eu-repo/semantics/publishedVersion http://agritrop.cirad.fr/597712/1/597712.pdf text Cirad license info:eu-repo/semantics/restrictedAccess https://agritrop.cirad.fr/mention_legale.html https://doi.org/10.1111/2041-210X.12841 10.1111/2041-210X.12841 info:eu-repo/semantics/altIdentifier/doi/10.1111/2041-210X.12841 info:eu-repo/semantics/altIdentifier/purl/https://doi.org/10.1111/2041-210X.12841 info:eu-repo/semantics/dataset/purl/https://doi.org/10.15468/dl.2mvxxk info:eu-repo/semantics/dataset/purl/https://www.worldclim.org/ |
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P01 - Conservation de la nature et ressources foncières U10 - Informatique, mathématiques et statistiques F70 - Taxonomie végétale et phytogéographie distribution des populations modélisation biodiversité bioinformatique logiciel écologie animale phytoécologie écologie des populations http://aims.fao.org/aos/agrovoc/c_6113 http://aims.fao.org/aos/agrovoc/c_230ab86c http://aims.fao.org/aos/agrovoc/c_33949 http://aims.fao.org/aos/agrovoc/c_37958 http://aims.fao.org/aos/agrovoc/c_24008 http://aims.fao.org/aos/agrovoc/c_427 http://aims.fao.org/aos/agrovoc/c_5963 http://aims.fao.org/aos/agrovoc/c_37336 P01 - Conservation de la nature et ressources foncières U10 - Informatique, mathématiques et statistiques F70 - Taxonomie végétale et phytogéographie distribution des populations modélisation biodiversité bioinformatique logiciel écologie animale phytoécologie écologie des populations http://aims.fao.org/aos/agrovoc/c_6113 http://aims.fao.org/aos/agrovoc/c_230ab86c http://aims.fao.org/aos/agrovoc/c_33949 http://aims.fao.org/aos/agrovoc/c_37958 http://aims.fao.org/aos/agrovoc/c_24008 http://aims.fao.org/aos/agrovoc/c_427 http://aims.fao.org/aos/agrovoc/c_5963 http://aims.fao.org/aos/agrovoc/c_37336 |
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P01 - Conservation de la nature et ressources foncières U10 - Informatique, mathématiques et statistiques F70 - Taxonomie végétale et phytogéographie distribution des populations modélisation biodiversité bioinformatique logiciel écologie animale phytoécologie écologie des populations http://aims.fao.org/aos/agrovoc/c_6113 http://aims.fao.org/aos/agrovoc/c_230ab86c http://aims.fao.org/aos/agrovoc/c_33949 http://aims.fao.org/aos/agrovoc/c_37958 http://aims.fao.org/aos/agrovoc/c_24008 http://aims.fao.org/aos/agrovoc/c_427 http://aims.fao.org/aos/agrovoc/c_5963 http://aims.fao.org/aos/agrovoc/c_37336 P01 - Conservation de la nature et ressources foncières U10 - Informatique, mathématiques et statistiques F70 - Taxonomie végétale et phytogéographie distribution des populations modélisation biodiversité bioinformatique logiciel écologie animale phytoécologie écologie des populations http://aims.fao.org/aos/agrovoc/c_6113 http://aims.fao.org/aos/agrovoc/c_230ab86c http://aims.fao.org/aos/agrovoc/c_33949 http://aims.fao.org/aos/agrovoc/c_37958 http://aims.fao.org/aos/agrovoc/c_24008 http://aims.fao.org/aos/agrovoc/c_427 http://aims.fao.org/aos/agrovoc/c_5963 http://aims.fao.org/aos/agrovoc/c_37336 Schmitt, Sylvain Pouteau, Robin Justeau-Allaire, Dimitri De Boissieu, Florian Birnbaum, Philippe SSDM : An R package to predict distribution of species richness and composition based on stacked species distribution models |
description |
There is growing interest among conservationists in biodiversity mapping based on stacked species distribution models (SSDMs), a method that combines multiple individual species distribution models to produce a community-level model. However, no user-friendly interface specifically designed to provide the basic tools needed to fit such models was available until now. The “ssdm” package is a computer platform implemented in r providing a range of methodological approaches and parameterisation at each step in building the SSDM: e.g. pseudo-absence selection, variable contribution and model accuracy assessment, inter-model consensus forecasting, species assembly design, and calculation of weighted endemism. The object-oriented design of the package is such that: users can modify existing methods, extend the framework by implementing new methods, and share them to be reproduced by others. The package includes a graphical user interface to extend the use of SSDMs to a wide range of conservation scientists and practitioners. |
format |
article |
topic_facet |
P01 - Conservation de la nature et ressources foncières U10 - Informatique, mathématiques et statistiques F70 - Taxonomie végétale et phytogéographie distribution des populations modélisation biodiversité bioinformatique logiciel écologie animale phytoécologie écologie des populations http://aims.fao.org/aos/agrovoc/c_6113 http://aims.fao.org/aos/agrovoc/c_230ab86c http://aims.fao.org/aos/agrovoc/c_33949 http://aims.fao.org/aos/agrovoc/c_37958 http://aims.fao.org/aos/agrovoc/c_24008 http://aims.fao.org/aos/agrovoc/c_427 http://aims.fao.org/aos/agrovoc/c_5963 http://aims.fao.org/aos/agrovoc/c_37336 |
author |
Schmitt, Sylvain Pouteau, Robin Justeau-Allaire, Dimitri De Boissieu, Florian Birnbaum, Philippe |
author_facet |
Schmitt, Sylvain Pouteau, Robin Justeau-Allaire, Dimitri De Boissieu, Florian Birnbaum, Philippe |
author_sort |
Schmitt, Sylvain |
title |
SSDM : An R package to predict distribution of species richness and composition based on stacked species distribution models |
title_short |
SSDM : An R package to predict distribution of species richness and composition based on stacked species distribution models |
title_full |
SSDM : An R package to predict distribution of species richness and composition based on stacked species distribution models |
title_fullStr |
SSDM : An R package to predict distribution of species richness and composition based on stacked species distribution models |
title_full_unstemmed |
SSDM : An R package to predict distribution of species richness and composition based on stacked species distribution models |
title_sort |
ssdm : an r package to predict distribution of species richness and composition based on stacked species distribution models |
url |
http://agritrop.cirad.fr/597712/ http://agritrop.cirad.fr/597712/1/597712.pdf |
work_keys_str_mv |
AT schmittsylvain ssdmanrpackagetopredictdistributionofspeciesrichnessandcompositionbasedonstackedspeciesdistributionmodels AT pouteaurobin ssdmanrpackagetopredictdistributionofspeciesrichnessandcompositionbasedonstackedspeciesdistributionmodels AT justeauallairedimitri ssdmanrpackagetopredictdistributionofspeciesrichnessandcompositionbasedonstackedspeciesdistributionmodels AT deboissieuflorian ssdmanrpackagetopredictdistributionofspeciesrichnessandcompositionbasedonstackedspeciesdistributionmodels AT birnbaumphilippe ssdmanrpackagetopredictdistributionofspeciesrichnessandcompositionbasedonstackedspeciesdistributionmodels |
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1792500113469341696 |