Analysis of the genetic diversity of Dragon fruit based on ISSR markers in Colombia

Selenicereus megalanthus H. is a tropical fruit belonging to the family Cactaceae, is rich in essential nutrients, antioxidants and bioactive components. It presents wide variability in different characteristics and a great demand in the market; however, genetic studies in Colombia are scarce. The main of this study was to characterize the genetic diversity of 76 yellow pitahaya genotypes with eight ISSR markers. Genetic parameters expected average heterozygosity (He), percentage of polymorphic loci, genetic distances and Fst were estimated with TFPGA. The analysis of the population genetic structure was carried out with the STRUCTURE 2.3.4. As a result, 225 alleles were generated and the number of polymorphic loci ranged 85 (CT, AG) to 90 (GT). High genetic diversity was found, with an average value of heterozygosity was 0.34 with a genetic differentiation coefficient (Fst) of 0.26, indicating that there was a great genetic diversity, similar values than those reported in other studies of pitahaya genetic diversity in Colombia. The 76 genotypes were grouped into K=3 according to geographic location, however, in some groups a mixture of individuals from different origins was observed. The analysis of molecular variance (AMOVA) showed higher variation (75%) within groups than among groups (25%). These results provide information that can be used to develop conservation strategies for dragon fruit and breeding programs to obtain more productive pitahaya genotypes with superior quality, high yield and with resistance to biotic and abiotic factors.

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Main Authors: Morillo ., A. C, Mora, M. S., Morillo-Coronado, Yacenia
Format: article biblioteca
Language:eng
Published: Instituto Internacional de Ecologia 2022
Subjects:Genética vegetal y fitomejoramiento - F30, Pitahaya, Variación genética, Marcadores genéticos, Germoplasma, Frutales, http://aims.fao.org/aos/agrovoc/c_42ce209e, http://aims.fao.org/aos/agrovoc/c_15975, http://aims.fao.org/aos/agrovoc/c_24030, http://aims.fao.org/aos/agrovoc/c_3249,
Online Access:http://www.scielo.br/j/bjb/a/LHVJ9L6WxL5KjVR7S9CSSxS/abstract/?lang=pt
http://hdl.handle.net/20.500.12324/38665
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record_format koha
institution AGROSAVIA
collection DSpace
country Colombia
countrycode CO
component Bibliográfico
access En linea
databasecode dig-bac
tag biblioteca
region America del Sur
libraryname Biblioteca Agropecuaria de Colombia
language eng
topic Genética vegetal y fitomejoramiento - F30
Pitahaya
Variación genética
Marcadores genéticos
Germoplasma
Frutales
http://aims.fao.org/aos/agrovoc/c_42ce209e
http://aims.fao.org/aos/agrovoc/c_15975
http://aims.fao.org/aos/agrovoc/c_24030
http://aims.fao.org/aos/agrovoc/c_3249
Genética vegetal y fitomejoramiento - F30
Pitahaya
Variación genética
Marcadores genéticos
Germoplasma
Frutales
http://aims.fao.org/aos/agrovoc/c_42ce209e
http://aims.fao.org/aos/agrovoc/c_15975
http://aims.fao.org/aos/agrovoc/c_24030
http://aims.fao.org/aos/agrovoc/c_3249
spellingShingle Genética vegetal y fitomejoramiento - F30
Pitahaya
Variación genética
Marcadores genéticos
Germoplasma
Frutales
http://aims.fao.org/aos/agrovoc/c_42ce209e
http://aims.fao.org/aos/agrovoc/c_15975
http://aims.fao.org/aos/agrovoc/c_24030
http://aims.fao.org/aos/agrovoc/c_3249
Genética vegetal y fitomejoramiento - F30
Pitahaya
Variación genética
Marcadores genéticos
Germoplasma
Frutales
http://aims.fao.org/aos/agrovoc/c_42ce209e
http://aims.fao.org/aos/agrovoc/c_15975
http://aims.fao.org/aos/agrovoc/c_24030
http://aims.fao.org/aos/agrovoc/c_3249
Morillo ., A. C
Mora, M. S.
Morillo-Coronado, Yacenia
Analysis of the genetic diversity of Dragon fruit based on ISSR markers in Colombia
description Selenicereus megalanthus H. is a tropical fruit belonging to the family Cactaceae, is rich in essential nutrients, antioxidants and bioactive components. It presents wide variability in different characteristics and a great demand in the market; however, genetic studies in Colombia are scarce. The main of this study was to characterize the genetic diversity of 76 yellow pitahaya genotypes with eight ISSR markers. Genetic parameters expected average heterozygosity (He), percentage of polymorphic loci, genetic distances and Fst were estimated with TFPGA. The analysis of the population genetic structure was carried out with the STRUCTURE 2.3.4. As a result, 225 alleles were generated and the number of polymorphic loci ranged 85 (CT, AG) to 90 (GT). High genetic diversity was found, with an average value of heterozygosity was 0.34 with a genetic differentiation coefficient (Fst) of 0.26, indicating that there was a great genetic diversity, similar values than those reported in other studies of pitahaya genetic diversity in Colombia. The 76 genotypes were grouped into K=3 according to geographic location, however, in some groups a mixture of individuals from different origins was observed. The analysis of molecular variance (AMOVA) showed higher variation (75%) within groups than among groups (25%). These results provide information that can be used to develop conservation strategies for dragon fruit and breeding programs to obtain more productive pitahaya genotypes with superior quality, high yield and with resistance to biotic and abiotic factors.
format article
topic_facet Genética vegetal y fitomejoramiento - F30
Pitahaya
Variación genética
Marcadores genéticos
Germoplasma
Frutales
http://aims.fao.org/aos/agrovoc/c_42ce209e
http://aims.fao.org/aos/agrovoc/c_15975
http://aims.fao.org/aos/agrovoc/c_24030
http://aims.fao.org/aos/agrovoc/c_3249
author Morillo ., A. C
Mora, M. S.
Morillo-Coronado, Yacenia
author_facet Morillo ., A. C
Mora, M. S.
Morillo-Coronado, Yacenia
author_sort Morillo ., A. C
title Analysis of the genetic diversity of Dragon fruit based on ISSR markers in Colombia
title_short Analysis of the genetic diversity of Dragon fruit based on ISSR markers in Colombia
title_full Analysis of the genetic diversity of Dragon fruit based on ISSR markers in Colombia
title_fullStr Analysis of the genetic diversity of Dragon fruit based on ISSR markers in Colombia
title_full_unstemmed Analysis of the genetic diversity of Dragon fruit based on ISSR markers in Colombia
title_sort analysis of the genetic diversity of dragon fruit based on issr markers in colombia
publisher Instituto Internacional de Ecologia
publishDate 2022
url http://www.scielo.br/j/bjb/a/LHVJ9L6WxL5KjVR7S9CSSxS/abstract/?lang=pt
http://hdl.handle.net/20.500.12324/38665
work_keys_str_mv AT morilloac analysisofthegeneticdiversityofdragonfruitbasedonissrmarkersincolombia
AT morams analysisofthegeneticdiversityofdragonfruitbasedonissrmarkersincolombia
AT morillocoronadoyacenia analysisofthegeneticdiversityofdragonfruitbasedonissrmarkersincolombia
_version_ 1787226119411335168
spelling dig-bac-20.500.12324-386652023-11-30T03:01:28Z Analysis of the genetic diversity of Dragon fruit based on ISSR markers in Colombia Morillo ., A. C Mora, M. S. Morillo-Coronado, Yacenia Genética vegetal y fitomejoramiento - F30 Pitahaya Variación genética Marcadores genéticos Germoplasma Frutales http://aims.fao.org/aos/agrovoc/c_42ce209e http://aims.fao.org/aos/agrovoc/c_15975 http://aims.fao.org/aos/agrovoc/c_24030 http://aims.fao.org/aos/agrovoc/c_3249 Selenicereus megalanthus H. is a tropical fruit belonging to the family Cactaceae, is rich in essential nutrients, antioxidants and bioactive components. It presents wide variability in different characteristics and a great demand in the market; however, genetic studies in Colombia are scarce. The main of this study was to characterize the genetic diversity of 76 yellow pitahaya genotypes with eight ISSR markers. Genetic parameters expected average heterozygosity (He), percentage of polymorphic loci, genetic distances and Fst were estimated with TFPGA. The analysis of the population genetic structure was carried out with the STRUCTURE 2.3.4. As a result, 225 alleles were generated and the number of polymorphic loci ranged 85 (CT, AG) to 90 (GT). High genetic diversity was found, with an average value of heterozygosity was 0.34 with a genetic differentiation coefficient (Fst) of 0.26, indicating that there was a great genetic diversity, similar values than those reported in other studies of pitahaya genetic diversity in Colombia. The 76 genotypes were grouped into K=3 according to geographic location, however, in some groups a mixture of individuals from different origins was observed. The analysis of molecular variance (AMOVA) showed higher variation (75%) within groups than among groups (25%). These results provide information that can be used to develop conservation strategies for dragon fruit and breeding programs to obtain more productive pitahaya genotypes with superior quality, high yield and with resistance to biotic and abiotic factors. Pitaya-Hylocereus triangularis 2023-11-29T13:29:08Z 2023-11-29T13:29:08Z 2022 2022 article Artículo científico http://purl.org/coar/resource_type/c_2df8fbb1 info:eu-repo/semantics/article https://purl.org/redcol/resource_type/ART http://purl.org/coar/version/c_970fb48d4fbd8a85 http://www.scielo.br/j/bjb/a/LHVJ9L6WxL5KjVR7S9CSSxS/abstract/?lang=pt 1678-4375 http://hdl.handle.net/20.500.12324/38665 10.1590/1519-6984.256451 reponame:Biblioteca Digital Agropecuaria de Colombia instname:Corporación colombiana de investigación agropecuaria AGROSAVIA eng Brazilian Journal of Biology 82 82 1 10 ABIRAMI, K., SWAIN, S., BASKARAN, V., VENKATESAN, K., SAKTHIVEL, K. and BOMMAYASAMY, N., 2021. Distinguishing three Dragon fruit (Hylocereus spp.) species grown in Andaman and Nicobar Islands of India using morphological, biochemical and molecular traits. Scientific Reports, vol. 11, no. 1, pp. 2894. http://dx.doi. org/10.1038/s41598-021-81682-x. PMid:33536453. CAETANO, M.C., TAMAYO, F., MUÑOZ, J.E., MORALES, J.G., SUÁREZ, R.S., SANDOVAL, C.L., MARTÍNEZ, M.A., CAÑAR, D.Y., PEÑA, R.D., SÁNCHEZ, E., GALÍNDEZ, E., ROJAS, R.D., JIMÉNEZ, J.R., BENAVIDES, A.E. and PÉREZ, L.F., 2011. Enfoque multidisciplinario para solución en el agro colombiano: el caso Pitahaya amarilla Selenicereus megalanthus. Revista de la Asociación Colombiana de Ciencias Biológicas, vol. 1, no. 23, pp. 52-64. CASTAÑEDA-CARDONA, C.C., MORILLO-CORONADO, Y. and MORILLO, A., 2020. Assessing the genetic diversity of Dioscorea alata and related species from Colombia through inter-simple sequence repeat (ISSR) markers. Chilean Journal of Agricultural Research, vol. 80, no. 4, pp. 608-616. http://dx.doi.org/10.4067/S0718- 58392020000400608. DELLAPORTA, S.L., WOOD, J. and HICKS, J.B., 1983. A plant DNA minipreparation: version II. Plant Molecular Biology Reporter, vol. 1, no. 1, pp. 19-21. http://dx.doi.org/10.1007/BF02712670 DOTOR, M.Y., GONZÁLEZ, L.A., CASTRO, M.A., MORILLO, A.C. and MORILLO, Y., 2016. Análisis de la diversidad genética de la mora (Rubus spp.) en el departamento de Boyacá. Biotecnologia en el Sector Agropecuario y Agroindustrial, vol. 14, no. 2, pp. 10-17. http://dx.doi.org/10.18684/BSAA(14)10-17. EVANNO, G., REGNAUT, S. and GOUDET, J., 2005. Detecting the number of clusters of individuals using the software structure: a simulation study. Molecular Ecology, vol. 14, no. 8, pp. 2611- 2620. http://dx.doi.org/10.1111/j.1365-294X.2005.02553.x. PMid:15969739. GARCÍA AGUILAR, M.A., TERRAZAS, T., SEGURA LEÓN, O., ARIAS, S., VIBRANS, H. and LÓPEZ-MATA, L., 2013. Caracterización molecular de tres especies de Hylocereus (Cactaceae) presentes en México. Revista Fitotecnia Mexicana, vol. 36, no. 1, pp. 13-22. http://dx.doi.org/10.35196/rfm.2013.1.13. GONZÁLEZ, M.A., PERAZA, A.R. and BROCHERO, H., 2019. Insectos asociados a cultivos de pitaya amarilla (Selenicerus megalanthus) en Inzá, Cauca, Colombia. Revista Colombiana de Entomologia, vol. 45, no. 2, pp. 1-8. http://dx.doi.org/10.25100/socolen.v45i2.7961. LI, D., ARROYAVE MARTINEZ, M.F., SHAKED, R. and TEL-ZUR, N., 2018. Homozygote depression in gamete-derived dragon-fruit (Hylocereus) lines. Frontiers in Plant Science, vol. 8, no. 2142, pp. 2142. http://dx.doi.org/10.3389/fpls.2017.02142. PMid:29354138. MARTÍNEZ, M.A., MORILLO, A.C. and REYES-ARDILA, L., 2020. Characterization of the genetic diversity in Passiflora spp. in the Boyacá department, Colombia. Chilean Journal of Agricultural Research, vol. 80, no. 3, pp. 342-351. http://dx.doi.org/10.4067/ S0718-58392020000300342. MARTÍNEZ, R., LIVERA, M. and MÁRQUEZ, G.J., 2015. Caracterización morfológica y compatibilidad sexual de cinco genotipos de pitahaya (Hylocereus undatus). Agrociencia, vol. 39, no. 2, pp. 183-194. MEJÍA, H.A., MURIEL, S.B., MONTOYA, C.A. and REYES, C., 2013. In situ morphological characterization of Hylocereus spp. (fam.: Cactaceae) genotypes from Antioquia and Córdoba (Colombia). Revista Facultad Nacional de Agronomía, vol. 66, no. 1, pp. 6845-6854. MORILLO, A.C., TOVAR, Y.P. and MORILLO, Y., 2016. Caracterización morfológica de Selenicerus megalanthus (K. Schum. ex Vaupel) moran en la provincia de Lengupá. Ciencia y Desarrollo, vol. 7, no. 2, pp. 23-33. http://dx.doi.org/10.19053/01217488. v7.n2.2016.4072. MORILLO, A.C., TOVAR, Y.P. and MORILLO, Y., 2017. Caracterización molecular de pitahaya amarilla (Selenicereus megalanthus Haw.) en la provincia de Lengupá, Boyacá-Colombia. Biotecnologia en el Sector Agropecuario y Agroindustrial, vol. 15, no. 1, pp. 11-18. http://dx.doi.org/10.18684/BSAA(15)11-18. NASHIMA, K., HOSAKA, F., SHIMAJIRI, Y., MATSUMURA, M., TARORA, K., URASAKI, N., SHODA, M., NISHITANI, C., SAWAMURA, Y. and YAMAMOTO, T., 2021. SSR marker development and genetic identification of pitaya (Hylocereus spp.) collected in Okinawa, prefecture, Japan. The Horticulture Journal, vol. 90, no. 1, pp. 23-30. http://dx.doi.org/10.2503/hortj.UTD-220. NEI, M. and LI, W.H., 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceedings of the National Academy of Sciences of the United States of America, vol. 76, no. 10, pp. 5269-5273. http://dx.doi.org/10.1073/ pnas.76.10.5269. PMid:291943. OLIVEIRA, M.M., SHUHUA, L., KUMBHA, D.S., ZURGIL, U., RAVEH, E. and TEL-ZUR, N., 2020. Performance of Hylocereus (Cactaceae) species and interspecific hybrids under high-temperatures stress. Plant Physiology and Biochemistry, vol. 153, no. 1, pp. 30-39. http://dx.doi.org/10.1016/j.plaphy.2020.04.044. PMid:32474384 OTT, J., 1992. Strategies for characterizing highly polymorphic markers in human genes mapping. American Journal of Human Genetics, vol. 51, no. 2, pp. 283-290. PMid:1642229. PAGLIACCIA, D., VIDALAKIS, G., DOUHAN, G., LOBO, R. and TANIZAKI, G., 2015. Genetic characterization of pitahaya accessions based on amplified fragment length polymorphism analysis. HortScience, vol. 50, no. 3, pp. 332-336. http://dx.doi. org/10.21273/HORTSCI.50.3.332. PÁSKO, P., GALANTY, A., ZAGRODZKI, P., GYU KU, Y., LUKSIRIKUL, P., WEISZ, M. and GORINSTEIN, S., 2021. Bioactivity and cytoxicity of different species of pitaya fruits-: a comparative study with advanced chemometric analysis. Food Bioscience, vol. 40, no. 1, pp. 1-8. PRITCHARD, J.K., STEPHENS, M. and DONNELLY, P., 2000. Inference of population structure using multilocus genotype data. Genetics, vol. 155, no. 2, pp. 945-959. http://dx.doi.org/10.1093/ genetics/155.2.945. PMid:10835412. QUIROZ, B., GARCÍA, M.R., GARCÍA, J. and COLINAS, M.T.B., 2018. Pitaya (Stenocereus spp.): an under-utilized fruit. Journal of the Professional Association for Cactus Development, vol. 20, no. 1, pp. 82-100. RED DE INFORMACIÓN Y COMUNICACIÓN DEL SECTOR AGROPECUARIO COLOMBIANO – AGRONET, (2021). [viewed August 2021]. Available from: https://www.agronet.gov.co/ estadistica/Paginas/home.aspx/cod=1. RIFAT, T., KHAN, K. and ISLAM, M.S., 2019. Genetic diversity in dragon fruit (Hylocereus sp.) germplasms revealed by RAPD marker. The Journal of Animal & Plant Sciences, vol. 29, no. 3, pp. 809-818. THOKCHOM, A., HAZARIKA, B.N. and ANGAMI, T., 2019. Dragon fruit: an advanced potential crop for Northeast India. Agriculture & Food, vol. 1, no. 1, pp. 253-256. WRIGHT, S., 1978. Evolution and the genetics of populations, variability within and among natural populations, Chicago: University of Chicago, vol. 4. ZAIN, N.M., NAZERI, M.A. and AZMAN, N.A., 2019. Assessment on bioactive compounds and the effect of microwave on pitaya peel. Jurnal Teknologi, vol. 81, no. 2, pp. 11-19. ZHIJIANG, W., FENGZHU, H., LIFANG, H., GUIFENG, L., GUIDONG, L., ZHENYING, L., CHAOAN, L. and HAIYAN, D., 2021. Genetic Characterization of pitaya accessions based on ISSR analysis. Redai Zuowu Xuebao, vol. 42, no. 2, pp. 47-53. Attribution-NonCommercial-ShareAlike 4.0 International http://creativecommons.org/licenses/by-nc-sa/4.0/ application/pdf application/pdf Palmira C.I Palmira Colombia Instituto Internacional de Ecologia Brasil Brazilian Journal of Biology; Vol. 82, Núm. 82 (2022): Brazilian Journal of Biology;p. 1 - 10.