PDB-Metrics: a web tool for exploring the PDB contents.
Abstract. PDB-Metrics (http://sms.cbi.cnptia.embrapa.br/SMS/pdb_metrics/index.html) is a component of the Diamond STING suite of programs for the analysis of protein sequence, structure and function. It summarizes the characteristics of the collection of protein structure descriptions deposited in the Protein Data Bank (PDB) and provides a Web interface to search and browse the PDB, using a variety of alternative criteria. PDB-Metrics is a powerful tool for bioinformaticians to examine the data span in the PDB from several perspectives. Although other Web sites offer some similar resources to explore the PDB contents, PDB-Metrics is among those with the most complete set of such facilities, integrated into a single Web site. This program has been developed using SQLite, a C library that provides all the query facilities of a database management system.
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Format: | Artigo de periódico biblioteca |
Language: | English eng |
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2007-03-09
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Subjects: | Bioinformática, Banco de dados de proteína, PDB data distribution statistics, Protein Data Bank, Bioinformatics, Proteins, |
Online Access: | http://www.alice.cnptia.embrapa.br/alice/handle/doc/8264 |
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dig-alice-doc-82642017-05-18T01:24:56Z PDB-Metrics: a web tool for exploring the PDB contents. FILETO, R. KUSER, P. R. YAMAGISHI, M. E. B. RIBEIRO, A. A. QUINALIA, T. G. FRANCO, E. H. MANCINI, A. L. HIGA, R. H. OLIVEIRA, S. R. M. SANTOS, E. H. VIEIRA, F. D. MAZONI, I. CRUZ, S. A. B. NESHICH, G. RENATO FILETO; PAULA REGINA KUSER FALCAO, CNPTIA; MICHEL EDUARDO BELEZA YAMAGISHI, CNPTIA; ANDRÉ A. RIBEIRO; THIAGO G. QUINALIA; EDUARDO H. FRANCO; ADAUTO LUIZ MANCINI, CNPTIA; ROBERTO HIROSHI HIGA, CNPTIA; STANLEY ROBSON DE MEDEIROS OLIVEIRA, CNPTIA; EDGARD HENRIQUE DOS SANTOS, CNPTIA; FABIO DANILO VIEIRA, CNPTIA; IVAN MAZONI, CNPTIA; SERGIO APARECIDO BRAGA DA CRUZ, CNPTIA; GORAN NESHICH, CNPTIA. Bioinformática Banco de dados de proteína PDB data distribution statistics Protein Data Bank Bioinformatics Proteins Abstract. PDB-Metrics (http://sms.cbi.cnptia.embrapa.br/SMS/pdb_metrics/index.html) is a component of the Diamond STING suite of programs for the analysis of protein sequence, structure and function. It summarizes the characteristics of the collection of protein structure descriptions deposited in the Protein Data Bank (PDB) and provides a Web interface to search and browse the PDB, using a variety of alternative criteria. PDB-Metrics is a powerful tool for bioinformaticians to examine the data span in the PDB from several perspectives. Although other Web sites offer some similar resources to explore the PDB contents, PDB-Metrics is among those with the most complete set of such facilities, integrated into a single Web site. This program has been developed using SQLite, a C library that provides all the query facilities of a database management system. 2011-04-10T11:11:11Z 2011-04-10T11:11:11Z 2007-03-09 2006 2017-05-17T11:11:11Z Artigo de periódico Genetics and Molecular Research, v. 5, n. 2, p. 333-341, 2006. http://www.alice.cnptia.embrapa.br/alice/handle/doc/8264 en eng openAccess |
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Bioinformática Banco de dados de proteína PDB data distribution statistics Protein Data Bank Bioinformatics Proteins Bioinformática Banco de dados de proteína PDB data distribution statistics Protein Data Bank Bioinformatics Proteins |
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Bioinformática Banco de dados de proteína PDB data distribution statistics Protein Data Bank Bioinformatics Proteins Bioinformática Banco de dados de proteína PDB data distribution statistics Protein Data Bank Bioinformatics Proteins FILETO, R. KUSER, P. R. YAMAGISHI, M. E. B. RIBEIRO, A. A. QUINALIA, T. G. FRANCO, E. H. MANCINI, A. L. HIGA, R. H. OLIVEIRA, S. R. M. SANTOS, E. H. VIEIRA, F. D. MAZONI, I. CRUZ, S. A. B. NESHICH, G. PDB-Metrics: a web tool for exploring the PDB contents. |
description |
Abstract. PDB-Metrics (http://sms.cbi.cnptia.embrapa.br/SMS/pdb_metrics/index.html) is a component of the Diamond STING suite of programs for the analysis of protein sequence, structure and function. It summarizes the characteristics of the collection of protein structure descriptions deposited in the Protein Data Bank (PDB) and provides a Web interface to search and browse the PDB, using a variety of alternative criteria. PDB-Metrics is a powerful tool for bioinformaticians to examine the data span in the PDB from several perspectives. Although other Web sites offer some similar resources to explore the PDB contents, PDB-Metrics is among those with the most complete set of such facilities, integrated into a single Web site. This program has been developed using SQLite, a C library that provides all the query facilities of a database management system. |
author2 |
RENATO FILETO; PAULA REGINA KUSER FALCAO, CNPTIA; MICHEL EDUARDO BELEZA YAMAGISHI, CNPTIA; ANDRÉ A. RIBEIRO; THIAGO G. QUINALIA; EDUARDO H. FRANCO; ADAUTO LUIZ MANCINI, CNPTIA; ROBERTO HIROSHI HIGA, CNPTIA; STANLEY ROBSON DE MEDEIROS OLIVEIRA, CNPTIA; EDGARD HENRIQUE DOS SANTOS, CNPTIA; FABIO DANILO VIEIRA, CNPTIA; IVAN MAZONI, CNPTIA; SERGIO APARECIDO BRAGA DA CRUZ, CNPTIA; GORAN NESHICH, CNPTIA. |
author_facet |
RENATO FILETO; PAULA REGINA KUSER FALCAO, CNPTIA; MICHEL EDUARDO BELEZA YAMAGISHI, CNPTIA; ANDRÉ A. RIBEIRO; THIAGO G. QUINALIA; EDUARDO H. FRANCO; ADAUTO LUIZ MANCINI, CNPTIA; ROBERTO HIROSHI HIGA, CNPTIA; STANLEY ROBSON DE MEDEIROS OLIVEIRA, CNPTIA; EDGARD HENRIQUE DOS SANTOS, CNPTIA; FABIO DANILO VIEIRA, CNPTIA; IVAN MAZONI, CNPTIA; SERGIO APARECIDO BRAGA DA CRUZ, CNPTIA; GORAN NESHICH, CNPTIA. FILETO, R. KUSER, P. R. YAMAGISHI, M. E. B. RIBEIRO, A. A. QUINALIA, T. G. FRANCO, E. H. MANCINI, A. L. HIGA, R. H. OLIVEIRA, S. R. M. SANTOS, E. H. VIEIRA, F. D. MAZONI, I. CRUZ, S. A. B. NESHICH, G. |
format |
Artigo de periódico |
topic_facet |
Bioinformática Banco de dados de proteína PDB data distribution statistics Protein Data Bank Bioinformatics Proteins |
author |
FILETO, R. KUSER, P. R. YAMAGISHI, M. E. B. RIBEIRO, A. A. QUINALIA, T. G. FRANCO, E. H. MANCINI, A. L. HIGA, R. H. OLIVEIRA, S. R. M. SANTOS, E. H. VIEIRA, F. D. MAZONI, I. CRUZ, S. A. B. NESHICH, G. |
author_sort |
FILETO, R. |
title |
PDB-Metrics: a web tool for exploring the PDB contents. |
title_short |
PDB-Metrics: a web tool for exploring the PDB contents. |
title_full |
PDB-Metrics: a web tool for exploring the PDB contents. |
title_fullStr |
PDB-Metrics: a web tool for exploring the PDB contents. |
title_full_unstemmed |
PDB-Metrics: a web tool for exploring the PDB contents. |
title_sort |
pdb-metrics: a web tool for exploring the pdb contents. |
publishDate |
2007-03-09 |
url |
http://www.alice.cnptia.embrapa.br/alice/handle/doc/8264 |
work_keys_str_mv |
AT filetor pdbmetricsawebtoolforexploringthepdbcontents AT kuserpr pdbmetricsawebtoolforexploringthepdbcontents AT yamagishimeb pdbmetricsawebtoolforexploringthepdbcontents AT ribeiroaa pdbmetricsawebtoolforexploringthepdbcontents AT quinaliatg pdbmetricsawebtoolforexploringthepdbcontents AT francoeh pdbmetricsawebtoolforexploringthepdbcontents AT mancinial pdbmetricsawebtoolforexploringthepdbcontents AT higarh pdbmetricsawebtoolforexploringthepdbcontents AT oliveirasrm pdbmetricsawebtoolforexploringthepdbcontents AT santoseh pdbmetricsawebtoolforexploringthepdbcontents AT vieirafd pdbmetricsawebtoolforexploringthepdbcontents AT mazonii pdbmetricsawebtoolforexploringthepdbcontents AT cruzsab pdbmetricsawebtoolforexploringthepdbcontents AT neshichg pdbmetricsawebtoolforexploringthepdbcontents |
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