Diversity of viruses and viroids in the rhizosphere of common bean cultivars differing in resistance to the fungal root pathogen Fusarium oxysporum.

Diversity of viruses and viroids in the rhizosphere of common bean cultivars differing in resistance to the fungal root pathogen Fusarium oxysporum.

Abstract: The rhizosphere microbiome plays a key role in plant protection against soil-borne pathogens. Plant breeding for resistance against soil-borne pathogens can alter the rhizosphere microbiome. However, most studies have focused on bacterial and fungal communities, leaving the role of the virus and viroids unassessed. Here, we tested the influence of resistance breeding on the composition of rhizosphere viruses and viroids. By analyzing metatranscriptomes from the rhizosphere of common bean (Phaseolus vulgaris) cultivars with varying resistance to the soil-borne pathogen Fusarium oxysporum, we recovered sequences representing 78 and 23 novel populations of viruses and viroids, respectively. We compared the abundances of these infectious agents across the different cultivars and found that the Fusarium-resistant cultivar harbored >1.2 times more viroids and a more different composition of viroids and viruses than less resistant plants. Given their role in interfering with host metabolism and their potential influence on plant-fungi associations, our study suggests that changes in the rhizosphere infectome are an important consideration in breeding for resistance against soil-borne pathogens.

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Main Authors: BRAGA, L. P., TANENTZAP, A. J., LEE, B., TSAI, S. M., RAAIJMAKERS, J. M., MENDES, R., MENDES, L. W.
Other Authors: LUCAS P.P. BRAGA, UNIVERSITY OF CAMBRIDGE; ANDREW J. TANENTZAP, UNIVERSITY OF CAMBRIDGE; BENJAMIN LEE, NATIONAL INSTITUTES OF HEALTH; SIU MUI TSAI, UNIVERSIDADE DE SÃO PAULO; JOS M. RAAIJMAKERS, NETHERLANDS INSTITUTE OF ECOLOGY; RODRIGO MENDES, CNPMA; LUCAS WILLIAM MENDES, UNIVERSIDADE DE SÃO PAULO.
Format: Artigo de periódico biblioteca
Language:Ingles
English
Published: 2023-08-31
Subjects:Plant-microbe interactions, Infectome, Rizosfera, Feijão, Doença de Planta, Resistência, Vírus, Soil-plant interactions, Microbiome, Viruses, Beans, Food security,
Online Access:http://www.alice.cnptia.embrapa.br/alice/handle/doc/1156276
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spelling dig-alice-doc-11562762023-08-31T20:24:00Z Diversity of viruses and viroids in the rhizosphere of common bean cultivars differing in resistance to the fungal root pathogen Fusarium oxysporum. BRAGA, L. P. TANENTZAP, A. J. LEE, B. TSAI, S. M. RAAIJMAKERS, J. M. MENDES, R. MENDES, L. W. LUCAS P.P. BRAGA, UNIVERSITY OF CAMBRIDGE; ANDREW J. TANENTZAP, UNIVERSITY OF CAMBRIDGE; BENJAMIN LEE, NATIONAL INSTITUTES OF HEALTH; SIU MUI TSAI, UNIVERSIDADE DE SÃO PAULO; JOS M. RAAIJMAKERS, NETHERLANDS INSTITUTE OF ECOLOGY; RODRIGO MENDES, CNPMA; LUCAS WILLIAM MENDES, UNIVERSIDADE DE SÃO PAULO. Plant-microbe interactions Infectome Rizosfera Feijão Doença de Planta Resistência Vírus Soil-plant interactions Microbiome Viruses Beans Food security Abstract: The rhizosphere microbiome plays a key role in plant protection against soil-borne pathogens. Plant breeding for resistance against soil-borne pathogens can alter the rhizosphere microbiome. However, most studies have focused on bacterial and fungal communities, leaving the role of the virus and viroids unassessed. Here, we tested the influence of resistance breeding on the composition of rhizosphere viruses and viroids. By analyzing metatranscriptomes from the rhizosphere of common bean (Phaseolus vulgaris) cultivars with varying resistance to the soil-borne pathogen Fusarium oxysporum, we recovered sequences representing 78 and 23 novel populations of viruses and viroids, respectively. We compared the abundances of these infectious agents across the different cultivars and found that the Fusarium-resistant cultivar harbored >1.2 times more viroids and a more different composition of viroids and viruses than less resistant plants. Given their role in interfering with host metabolism and their potential influence on plant-fungi associations, our study suggests that changes in the rhizosphere infectome are an important consideration in breeding for resistance against soil-borne pathogens. 2023-08-31T20:24:00Z 2023-08-31T20:24:00Z 2023-08-31 2023 Artigo de periódico Applied Soil Ecology v.190, article 105018, 2023. 0929-1393 http://www.alice.cnptia.embrapa.br/alice/handle/doc/1156276 10.1016/j.apsoil.2023.105018 Ingles en openAccess
institution EMBRAPA
collection DSpace
country Brasil
countrycode BR
component Bibliográfico
access En linea
databasecode dig-alice
tag biblioteca
region America del Sur
libraryname Sistema de bibliotecas de EMBRAPA
language Ingles
English
topic Plant-microbe interactions
Infectome
Rizosfera
Feijão
Doença de Planta
Resistência
Vírus
Soil-plant interactions
Microbiome
Viruses
Beans
Food security
Plant-microbe interactions
Infectome
Rizosfera
Feijão
Doença de Planta
Resistência
Vírus
Soil-plant interactions
Microbiome
Viruses
Beans
Food security
spellingShingle Plant-microbe interactions
Infectome
Rizosfera
Feijão
Doença de Planta
Resistência
Vírus
Soil-plant interactions
Microbiome
Viruses
Beans
Food security
Plant-microbe interactions
Infectome
Rizosfera
Feijão
Doença de Planta
Resistência
Vírus
Soil-plant interactions
Microbiome
Viruses
Beans
Food security
BRAGA, L. P.
TANENTZAP, A. J.
LEE, B.
TSAI, S. M.
RAAIJMAKERS, J. M.
MENDES, R.
MENDES, L. W.
Diversity of viruses and viroids in the rhizosphere of common bean cultivars differing in resistance to the fungal root pathogen Fusarium oxysporum.
description Abstract: The rhizosphere microbiome plays a key role in plant protection against soil-borne pathogens. Plant breeding for resistance against soil-borne pathogens can alter the rhizosphere microbiome. However, most studies have focused on bacterial and fungal communities, leaving the role of the virus and viroids unassessed. Here, we tested the influence of resistance breeding on the composition of rhizosphere viruses and viroids. By analyzing metatranscriptomes from the rhizosphere of common bean (Phaseolus vulgaris) cultivars with varying resistance to the soil-borne pathogen Fusarium oxysporum, we recovered sequences representing 78 and 23 novel populations of viruses and viroids, respectively. We compared the abundances of these infectious agents across the different cultivars and found that the Fusarium-resistant cultivar harbored >1.2 times more viroids and a more different composition of viroids and viruses than less resistant plants. Given their role in interfering with host metabolism and their potential influence on plant-fungi associations, our study suggests that changes in the rhizosphere infectome are an important consideration in breeding for resistance against soil-borne pathogens.
author2 LUCAS P.P. BRAGA, UNIVERSITY OF CAMBRIDGE; ANDREW J. TANENTZAP, UNIVERSITY OF CAMBRIDGE; BENJAMIN LEE, NATIONAL INSTITUTES OF HEALTH; SIU MUI TSAI, UNIVERSIDADE DE SÃO PAULO; JOS M. RAAIJMAKERS, NETHERLANDS INSTITUTE OF ECOLOGY; RODRIGO MENDES, CNPMA; LUCAS WILLIAM MENDES, UNIVERSIDADE DE SÃO PAULO.
author_facet LUCAS P.P. BRAGA, UNIVERSITY OF CAMBRIDGE; ANDREW J. TANENTZAP, UNIVERSITY OF CAMBRIDGE; BENJAMIN LEE, NATIONAL INSTITUTES OF HEALTH; SIU MUI TSAI, UNIVERSIDADE DE SÃO PAULO; JOS M. RAAIJMAKERS, NETHERLANDS INSTITUTE OF ECOLOGY; RODRIGO MENDES, CNPMA; LUCAS WILLIAM MENDES, UNIVERSIDADE DE SÃO PAULO.
BRAGA, L. P.
TANENTZAP, A. J.
LEE, B.
TSAI, S. M.
RAAIJMAKERS, J. M.
MENDES, R.
MENDES, L. W.
format Artigo de periódico
topic_facet Plant-microbe interactions
Infectome
Rizosfera
Feijão
Doença de Planta
Resistência
Vírus
Soil-plant interactions
Microbiome
Viruses
Beans
Food security
author BRAGA, L. P.
TANENTZAP, A. J.
LEE, B.
TSAI, S. M.
RAAIJMAKERS, J. M.
MENDES, R.
MENDES, L. W.
author_sort BRAGA, L. P.
title Diversity of viruses and viroids in the rhizosphere of common bean cultivars differing in resistance to the fungal root pathogen Fusarium oxysporum.
title_short Diversity of viruses and viroids in the rhizosphere of common bean cultivars differing in resistance to the fungal root pathogen Fusarium oxysporum.
title_full Diversity of viruses and viroids in the rhizosphere of common bean cultivars differing in resistance to the fungal root pathogen Fusarium oxysporum.
title_fullStr Diversity of viruses and viroids in the rhizosphere of common bean cultivars differing in resistance to the fungal root pathogen Fusarium oxysporum.
title_full_unstemmed Diversity of viruses and viroids in the rhizosphere of common bean cultivars differing in resistance to the fungal root pathogen Fusarium oxysporum.
title_sort diversity of viruses and viroids in the rhizosphere of common bean cultivars differing in resistance to the fungal root pathogen fusarium oxysporum.
publishDate 2023-08-31
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1156276
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