Boosting predictive ability of tropical maize hybrids via genotype-by-environment interaction under multivariate GBLUP models.

Genomic selection has been implemented in several plant and animal breeding programs and it has proven to improve efficiency and maximize genetic gains. Phenotypic data of grain yield was measured in 147 maize (Zea mays L.) singlecross hybrids at 12 environments. Single-cross hybrids genotypes were inferred based on their parents (inbred lines) via single nucleotide polymorphism (SNP) markers obtained from genotyping-by-sequencing (GBS). Factor analytic multiplicative genomic best linear unbiased prediction (GBLUP) models, in the framework of multienvironment trials, were used to predict grain yield performance of unobserved tropical maize single-cross hybrids. Predictions were performed for two situations: untested hybrids (CV1), and hybrids evaluated in some environments but missing in others (CV2). Models that borrowed information across individuals through genomic relationships and within individuals across environments presented higher predictive accuracy than those models that ignored it. For these models, predictive accuracies were up to 0.4 until eight environments were considered as missing for the validation set, which represents 67% of missing data for a given hybrid. These results highlight the importance of including genotype-by-environment interactions and genomic relationship information for boosting predictions of tropical maize single-cross hybrids for grain yield.

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Main Authors: KRAUSE, M. D., DIAS, K. O. das G., SANTOS, J. P. R. dos, OLIVEIRA, A. A. de, GUIMARAES, L. J. M., PASTINA, M. M., MARGARIDO, G. R. A., GARCIA, A. A. F.
Other Authors: Matheus Dalsente Krause, Iowa State University; Kaio Olímpio das Graças Dias, Escola Superior de Agricultura "Luiz de Queiroz"; Jhonathan Pedroso Rigal dos Santos, Escola Superior de Agricultura "Luiz de Queiroz"; Amanda Avelar de Oliveira, Escola Superior de Agricultura "Luiz de Queiroz"; LAURO JOSE MOREIRA GUIMARAES, CNPMS; MARIA MARTA PASTINA, CNPMS; Gabriel Rodrigues Alves Margarido, Escola Superior de Agricultura "Luiz de Queiroz"; Antonio Augusto Franco Garcia, Escola Superior de Agricultura "Luiz de Queiroz".
Format: Artigo de periódico biblioteca
Language:Ingles
English
Published: 2020-08-20
Subjects:Milho, Melhoramento Genético Vegetal, Genótipo,
Online Access:http://www.alice.cnptia.embrapa.br/alice/handle/doc/1124456
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spelling dig-alice-doc-11244562020-12-22T09:02:19Z Boosting predictive ability of tropical maize hybrids via genotype-by-environment interaction under multivariate GBLUP models. KRAUSE, M. D. DIAS, K. O. das G. SANTOS, J. P. R. dos OLIVEIRA, A. A. de GUIMARAES, L. J. M. PASTINA, M. M. MARGARIDO, G. R. A. GARCIA, A. A. F. Matheus Dalsente Krause, Iowa State University; Kaio Olímpio das Graças Dias, Escola Superior de Agricultura "Luiz de Queiroz"; Jhonathan Pedroso Rigal dos Santos, Escola Superior de Agricultura "Luiz de Queiroz"; Amanda Avelar de Oliveira, Escola Superior de Agricultura "Luiz de Queiroz"; LAURO JOSE MOREIRA GUIMARAES, CNPMS; MARIA MARTA PASTINA, CNPMS; Gabriel Rodrigues Alves Margarido, Escola Superior de Agricultura "Luiz de Queiroz"; Antonio Augusto Franco Garcia, Escola Superior de Agricultura "Luiz de Queiroz". Milho Melhoramento Genético Vegetal Genótipo Genomic selection has been implemented in several plant and animal breeding programs and it has proven to improve efficiency and maximize genetic gains. Phenotypic data of grain yield was measured in 147 maize (Zea mays L.) singlecross hybrids at 12 environments. Single-cross hybrids genotypes were inferred based on their parents (inbred lines) via single nucleotide polymorphism (SNP) markers obtained from genotyping-by-sequencing (GBS). Factor analytic multiplicative genomic best linear unbiased prediction (GBLUP) models, in the framework of multienvironment trials, were used to predict grain yield performance of unobserved tropical maize single-cross hybrids. Predictions were performed for two situations: untested hybrids (CV1), and hybrids evaluated in some environments but missing in others (CV2). Models that borrowed information across individuals through genomic relationships and within individuals across environments presented higher predictive accuracy than those models that ignored it. For these models, predictive accuracies were up to 0.4 until eight environments were considered as missing for the validation set, which represents 67% of missing data for a given hybrid. These results highlight the importance of including genotype-by-environment interactions and genomic relationship information for boosting predictions of tropical maize single-cross hybrids for grain yield. 2020-12-22T09:02:13Z 2020-12-22T09:02:13Z 2020-08-20 2020 Artigo de periódico Crop Science, v. 60, n. 6, p. 3049-3065, 2020. http://www.alice.cnptia.embrapa.br/alice/handle/doc/1124456 10.1002/csc2.20253 Ingles en openAccess
institution EMBRAPA
collection DSpace
country Brasil
countrycode BR
component Bibliográfico
access En linea
databasecode dig-alice
tag biblioteca
region America del Sur
libraryname Sistema de bibliotecas de EMBRAPA
language Ingles
English
topic Milho
Melhoramento Genético Vegetal
Genótipo
Milho
Melhoramento Genético Vegetal
Genótipo
spellingShingle Milho
Melhoramento Genético Vegetal
Genótipo
Milho
Melhoramento Genético Vegetal
Genótipo
KRAUSE, M. D.
DIAS, K. O. das G.
SANTOS, J. P. R. dos
OLIVEIRA, A. A. de
GUIMARAES, L. J. M.
PASTINA, M. M.
MARGARIDO, G. R. A.
GARCIA, A. A. F.
Boosting predictive ability of tropical maize hybrids via genotype-by-environment interaction under multivariate GBLUP models.
description Genomic selection has been implemented in several plant and animal breeding programs and it has proven to improve efficiency and maximize genetic gains. Phenotypic data of grain yield was measured in 147 maize (Zea mays L.) singlecross hybrids at 12 environments. Single-cross hybrids genotypes were inferred based on their parents (inbred lines) via single nucleotide polymorphism (SNP) markers obtained from genotyping-by-sequencing (GBS). Factor analytic multiplicative genomic best linear unbiased prediction (GBLUP) models, in the framework of multienvironment trials, were used to predict grain yield performance of unobserved tropical maize single-cross hybrids. Predictions were performed for two situations: untested hybrids (CV1), and hybrids evaluated in some environments but missing in others (CV2). Models that borrowed information across individuals through genomic relationships and within individuals across environments presented higher predictive accuracy than those models that ignored it. For these models, predictive accuracies were up to 0.4 until eight environments were considered as missing for the validation set, which represents 67% of missing data for a given hybrid. These results highlight the importance of including genotype-by-environment interactions and genomic relationship information for boosting predictions of tropical maize single-cross hybrids for grain yield.
author2 Matheus Dalsente Krause, Iowa State University; Kaio Olímpio das Graças Dias, Escola Superior de Agricultura "Luiz de Queiroz"; Jhonathan Pedroso Rigal dos Santos, Escola Superior de Agricultura "Luiz de Queiroz"; Amanda Avelar de Oliveira, Escola Superior de Agricultura "Luiz de Queiroz"; LAURO JOSE MOREIRA GUIMARAES, CNPMS; MARIA MARTA PASTINA, CNPMS; Gabriel Rodrigues Alves Margarido, Escola Superior de Agricultura "Luiz de Queiroz"; Antonio Augusto Franco Garcia, Escola Superior de Agricultura "Luiz de Queiroz".
author_facet Matheus Dalsente Krause, Iowa State University; Kaio Olímpio das Graças Dias, Escola Superior de Agricultura "Luiz de Queiroz"; Jhonathan Pedroso Rigal dos Santos, Escola Superior de Agricultura "Luiz de Queiroz"; Amanda Avelar de Oliveira, Escola Superior de Agricultura "Luiz de Queiroz"; LAURO JOSE MOREIRA GUIMARAES, CNPMS; MARIA MARTA PASTINA, CNPMS; Gabriel Rodrigues Alves Margarido, Escola Superior de Agricultura "Luiz de Queiroz"; Antonio Augusto Franco Garcia, Escola Superior de Agricultura "Luiz de Queiroz".
KRAUSE, M. D.
DIAS, K. O. das G.
SANTOS, J. P. R. dos
OLIVEIRA, A. A. de
GUIMARAES, L. J. M.
PASTINA, M. M.
MARGARIDO, G. R. A.
GARCIA, A. A. F.
format Artigo de periódico
topic_facet Milho
Melhoramento Genético Vegetal
Genótipo
author KRAUSE, M. D.
DIAS, K. O. das G.
SANTOS, J. P. R. dos
OLIVEIRA, A. A. de
GUIMARAES, L. J. M.
PASTINA, M. M.
MARGARIDO, G. R. A.
GARCIA, A. A. F.
author_sort KRAUSE, M. D.
title Boosting predictive ability of tropical maize hybrids via genotype-by-environment interaction under multivariate GBLUP models.
title_short Boosting predictive ability of tropical maize hybrids via genotype-by-environment interaction under multivariate GBLUP models.
title_full Boosting predictive ability of tropical maize hybrids via genotype-by-environment interaction under multivariate GBLUP models.
title_fullStr Boosting predictive ability of tropical maize hybrids via genotype-by-environment interaction under multivariate GBLUP models.
title_full_unstemmed Boosting predictive ability of tropical maize hybrids via genotype-by-environment interaction under multivariate GBLUP models.
title_sort boosting predictive ability of tropical maize hybrids via genotype-by-environment interaction under multivariate gblup models.
publishDate 2020-08-20
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1124456
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