Diaphorina citri genome assembly Diaci 1.9
<p>Diaci1.9 is interim version of the <em>Diaphorina citri</em> psyllid genome based on Pacbio long reads. We have generated 36.2Gb of Pacbio long reads from 41 SMRT cells with a coverage of 80X for the 400-450Mb psyllid genome. The canu assembler was used to create an interim assembly with a contig N50 of 115.8kb and 8352 contigs. DIACI v1.9 has 8,352 contigs compared to 161,988 contigs in Diaci1.1 genome assembly. It has a contig N50 of 115.8kb and does not contain any Ns. Please note that this is an interim assembly so we will not be annotating it.</p> <p>This project was funded by the U.S. Department of Agriculture under the DEVELOPING AN INFRASTRUCTURE AND PRODUCT TEST PIPELINE TO DELIVER NOVEL THERAPIES FOR CITRUS GREENING DISEASE grant. </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Diaphorina citri genome assembly Diaci 1.9.</p> <p>File Name: DIACI<em>v1.9.fasta</em>.gz</p><p>Resource Description: This resource is a fasta file of the DIACI_v1.9 genome assembly.</p></li></ul><p></p>
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2017
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Subjects: | Genomics and transcriptomics, Host-parasite interactions, Genetics, Environmental sciences, genome assembly, Diaphorina citri, Asian citrus psyllid, |
Online Access: | https://figshare.com/articles/dataset/Diaphorina_citri_genome_assembly_Diaci_1_9/24660615 |
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dat-usda-us-article246606152017-02-07T00:00:00Z Diaphorina citri genome assembly Diaci 1.9 Surya Saha (17477823) Wayne B. Hunter (17477820) Lukas A. Mueller (17477832) Susan Brown (3523838) Genomics and transcriptomics Host-parasite interactions Genetics Environmental sciences genome assembly Diaphorina citri Asian citrus psyllid <p>Diaci1.9 is interim version of the <em>Diaphorina citri</em> psyllid genome based on Pacbio long reads. We have generated 36.2Gb of Pacbio long reads from 41 SMRT cells with a coverage of 80X for the 400-450Mb psyllid genome. The canu assembler was used to create an interim assembly with a contig N50 of 115.8kb and 8352 contigs. DIACI v1.9 has 8,352 contigs compared to 161,988 contigs in Diaci1.1 genome assembly. It has a contig N50 of 115.8kb and does not contain any Ns. Please note that this is an interim assembly so we will not be annotating it.</p> <p>This project was funded by the U.S. Department of Agriculture under the DEVELOPING AN INFRASTRUCTURE AND PRODUCT TEST PIPELINE TO DELIVER NOVEL THERAPIES FOR CITRUS GREENING DISEASE grant. </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Diaphorina citri genome assembly Diaci 1.9.</p> <p>File Name: DIACI<em>v1.9.fasta</em>.gz</p><p>Resource Description: This resource is a fasta file of the DIACI_v1.9 genome assembly.</p></li></ul><p></p> 2017-02-07T00:00:00Z Dataset Dataset 10.15482/usda.adc/1342727 https://figshare.com/articles/dataset/Diaphorina_citri_genome_assembly_Diaci_1_9/24660615 CC0 |
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Genomics and transcriptomics Host-parasite interactions Genetics Environmental sciences genome assembly Diaphorina citri Asian citrus psyllid |
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Genomics and transcriptomics Host-parasite interactions Genetics Environmental sciences genome assembly Diaphorina citri Asian citrus psyllid Surya Saha (17477823) Wayne B. Hunter (17477820) Lukas A. Mueller (17477832) Susan Brown (3523838) Diaphorina citri genome assembly Diaci 1.9 |
description |
<p>Diaci1.9 is interim version of the <em>Diaphorina citri</em> psyllid genome based on Pacbio long reads. We have generated 36.2Gb of Pacbio long reads from 41 SMRT cells with a coverage of 80X for the 400-450Mb psyllid genome. The canu assembler was used to create an interim assembly with a contig N50 of 115.8kb and 8352 contigs. DIACI v1.9 has 8,352 contigs compared to 161,988 contigs in Diaci1.1 genome assembly. It has a contig N50 of 115.8kb and does not contain any Ns. Please note that this is an interim assembly so we will not be annotating it.</p>
<p>This project was funded by the U.S. Department of Agriculture under the DEVELOPING AN INFRASTRUCTURE AND PRODUCT TEST PIPELINE TO DELIVER NOVEL THERAPIES FOR CITRUS GREENING DISEASE grant. </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Diaphorina citri genome assembly Diaci 1.9.</p> <p>File Name: DIACI<em>v1.9.fasta</em>.gz</p><p>Resource Description: This resource is a fasta file of the DIACI_v1.9 genome assembly.</p></li></ul><p></p> |
format |
Dataset |
author |
Surya Saha (17477823) Wayne B. Hunter (17477820) Lukas A. Mueller (17477832) Susan Brown (3523838) |
author_facet |
Surya Saha (17477823) Wayne B. Hunter (17477820) Lukas A. Mueller (17477832) Susan Brown (3523838) |
author_sort |
Surya Saha (17477823) |
title |
Diaphorina citri genome assembly Diaci 1.9 |
title_short |
Diaphorina citri genome assembly Diaci 1.9 |
title_full |
Diaphorina citri genome assembly Diaci 1.9 |
title_fullStr |
Diaphorina citri genome assembly Diaci 1.9 |
title_full_unstemmed |
Diaphorina citri genome assembly Diaci 1.9 |
title_sort |
diaphorina citri genome assembly diaci 1.9 |
publishDate |
2017 |
url |
https://figshare.com/articles/dataset/Diaphorina_citri_genome_assembly_Diaci_1_9/24660615 |
work_keys_str_mv |
AT suryasaha17477823 diaphorinacitrigenomeassemblydiaci19 AT waynebhunter17477820 diaphorinacitrigenomeassemblydiaci19 AT lukasamueller17477832 diaphorinacitrigenomeassemblydiaci19 AT susanbrown3523838 diaphorinacitrigenomeassemblydiaci19 |
_version_ |
1798137069398130688 |