Genetic susceptibility to infectious disease in East African Shorthorn Zebu: A genome-wide analysis of the effect of heterozygosity and exotic introgression

by Murray, Gemma G.R., Woolhouse, Mark E.J., Tapio, Miika, Mbole-Kariuki, Mary N., Sonstegard, Tad S., Thumbi, Samuel M., Jennings, Amy E., Wyk, Ilana C. van, Chase-Topping, Margo, Kiara, Henry K., Toye, Philip G., Coetzer, Koos, Bronsvoort, Barend M. de C., Hanotte, Olivier H.
Published 2013

Identification of quantitative trait loci affecting resistance to gastrointestinal parasites in a double backcross population of Red Maasai and Dorper sheep

by Silva, M.V.B., Sonstegard, T.S., Hanotte, Olivier H., Mugambi, J.M.M., García, J.F., Nagda, S.M., Gibson, John P., Iraqi, F.A., McClintock, A.E., Kemp, Stephen J., Boettcher, P.J., Malek, M., Tassell, C.P. van, Baker, R.L.
Published 2012-02

Variation and covariation in strongyle infection in East African shorthorn zebu calves

by Callaby, R., Hanotte, Olivier H., Wyk, I.C. van, Kiara, Henry K., Toye, Philip G., Mbole-Kariuki, Mary N., Jennings, A., Thumbi, S.M., Coetzer, J.A.W., Bronsvoort, B.M. de C., Knott, S.A., Woolhouse, Mark E.J., Kruuk, L.E.B.
Published 2015-03

Hematological profile of East African short-horn zebu calves from birth to 51 weeks of age

by Wyk, I.C. van, Goddard, A., Bronsvoort, B.M. de C., Coetzer, J.A.W., Booth, C., Hanotte, Olivier H., Jennings, A., Kiara, Henry K., Mashego, P., Muller, C., Pretorius, G., Poole, Elizabeth J., Thumbi, S.M., Toye, Philip G., Woolhouse, Mark E.J., Penzhorn, B.L.
Published 2013-09

Geographic and breed distribution patterns of an A/G Polymorphism resent in the Mx gene suggests balanced selection in village chickens

by Ommeh, S., Jin, L.N., Eding, H., Muchadeyi, F.C., Sulandari, S., Danbaro, G., Wani, C.E., Nie, Q.H., Zhang, X. Q., Ndila, M., Preisinger, R., Chen, G.H., Yousif, I. A., Heo, K.N., Oh, S.J., Tapio, M., Masiga, Daniel K., Hanotte, Olivier H., Weigend, S., Han Jianlin
Published 2010-01-15

The mosaic genome of indigenous African cattle as a unique genetic resource for African pastoralism

by Kwondo Kim, Taehyung Kwon, Dessie, Tadelle, Dong Ahn Yoo, Okeyo Mwai, Ally, Jisung Jang, Samsun Sung, Saet Byeol Lee, Salim, B., Jaehoon Jung, Heesu Jeong, Mekuriaw, Getinet, Tijjani, Abdulfatai, Dajeong Lim, Seoae Cho, Sung Jong Oh, Hak-Kyo Lee, Jaemin Kim, Choongwon Jeong, Kemp, Stephen J., Hanotte, Olivier H., Heebal Kim
Published 2020-10

The genome landscape of indigenous African cattle

by Kim, Jaemin, Hanotte, Olivier H., Okeyo Mwai, Ally, Dessie, Tadelle, Salim, Bashir, Diallo, Boubacar, Agaba, Morris, Kwondo Kim, Woori Kwak, Samsun Sung, Seo, Minseok, Jeong, Hyeonsoo, Kwon, Taehyung, Taye, Mengistie, Song, Ki-Duk, Lim, Dajeong, Seoae Cho, Lee, Hyun-Jeong, Duhak Yoon, Sung Jong Oh, Kemp, Stephen J., Hak-Kyo Lee, Heebal Kim
Published 2017-12

The epidemiology of tick-borne haemoparasites as determined by the reverse line blot hybridization assay in an intensively studied cohort of calves in western Kenya

by Njiiri, N.E., Bronsvoort, B.M. de C., Collins, N.E., Steyn, H.C., Troskie, M., Vorster, I., Mwangi, T.S., Sibeko, K.P., Jennings, A., Wyk, I.C. van, Mbole-Kariuki, Mary N., Kiara, Henry K., Poole, Elizabeth J., Hanotte, Olivier H., Coetzer, K., Oosthuizen, M.C., Woolhouse, Mark E.J., Toye, Philip G.
Published 2015-05

Genetic and expression analysis of cattle identifies candidate genes in pathways responding to Trypanosoma congolense infection

by Noyes, H.A., Brass, A., Obara, I., Anderson, S.I., Archibald, A.L., Bradley, D.G., Fisher, P., Freeman, A.R., Gibson, John P., Gicheru, M., Hall, L., Hanotte, Olivier H., Hulme, H., McKeever, Declan J., Murray, C., Oh, S.J., Tate, C., Smith, K.C., Tapio, M., Wambugu, J., Williams, D., Agaba, Morris, Kemp, Stephen J.
Published 2011-05-31

The future of research at ILRI

by Smith, Jimmy W., Wright, Iain A., Grace, Delia, Perry, Brian D., Baltenweck, Isabelle, Bett, Bernard K., Blümmel, Michael, Haan, Nicoline C. de, Duncan, Alan J., Ericksen, Polly J., Hanotte, Olivier H., Hanson, Jean, Jones, Christopher S., Kemp, Stephen J., Okeyo Mwai, Ally, Nelson, Gerald C., Nene, Vishvanath, Robinson, Lance W., Staal, Steven J., Thornton, Philip K., Wieland, Barbara
Published 2020-12

Ancient and modern DNA reveal dynamics of domestication and cross-continental dispersal of the dromedary

by Almathen, F., Charruau, P., Mohandesan, E., Mwacharo, Joram M., Orozco-terWengel, P., Pitt, D., Abdussamad, A.M., Uerpmann, M., Uerpmann, H.P., Cupere, B. de, Magee, P., Alnaqeeb, M.A., Salim, B., Raziq, A., Dessie, Tadelle, Abdelhadi, O.M., Banabazi, M.H., Al-Eknah, M., Walzer, C., Faye, B., Hofreiter, M., Peters, J., Hanotte, Olivier H., Burger, P.A.
Published 2016-06-14

Co-infections determine patterns of mortality in a population exposed to parasite infection

by Woolhouse, Mark E.J., Thumbi, S.M., Jennings, A., Chase-Topping, M., Callaby, R., Kiara, Henry K., Oosthuizen, M.C., Mbole-Kariuki, Mary N., Conradie, I., Handel, I.G., Poole, Elizabeth J., Njiiri, E., Collins, N.E., Murray, G., Tapio, M., Auguet, O.T., Weir, W., Morrison, W. Ivan, Kruuk, L.E.B., Bronsvoort, B.M. de C., Hanotte, Olivier H., Coetzer, K., Toye, Philip G.
Published 2015-03-06

Whole-genome resequencing of wild and domestic sheep identifies genes associated with morphological and agronomic traits

by Li, X., Yang, J., Shen, M., Xie, X-L., Liu, G-J., Xu, Y-X., Lv, F-H., Yang, H., Yang, Y-L., Liu, C-B., Zhou, P., Wan, P-C., Zhang, Y-S., Gao, L., Yang, J-Q., Pi, W-H., Ren, Y-L., Shen, Z-Q., Wang, F., Deng, J., Xu, S.S., Salehian-Dehkordi, H., Hehua, E., Esmailizadeh, A., Dehghani-Qanatqestani, M., Štěpánek, O., Weimann, C., Erhardt, G., Amane, A., Mwacharo, Joram M., Han Jianlin, Hanotte, Olivier H., Lenstra, J.A., Kantanen, J., Coltman, D.W., Kijas, J.W., Bruford, M.W., Periasamy, K., Wang, X-H., Li, M-H.
Published 2020-06-04

Historical introgression from wild relatives enhanced climatic adaptation and resistance to pneumonia in sheep

by Yin-Hong Cao, Song-Song Xu, Min Shen, Ze-Hui Chen, Lei Gao, Feng-Hua Lv, Xing-Long Xie, Xin-Hua Wang, Hua Yang, Chang-Bin Liu, Ping Zhou, Peng-Cheng Wan, Yun-Sheng Zhang, Jing-Quan Yang, Wen-Hui Pi, EEr, H., Berry, D.P., Barbato, M., Esmailizadeh, A., Nosrati, M., Salehian-Dehkordi, H., Dehghani-Qanatqestani, M., Dotsev, A.V., Deniskova, T.E., Zinovieva, N.A., Brem, G., Štěpánek, O., Ciani, E., Weimann, C., Erhardt, G., Mwacharo, Joram M., Ahbara, A., Han Jianlin, Hanotte, Olivier H., Miller, J.M., Sim, Z., Zijian Sim, Coltman, D., Kantanen, J., Bruford, M.W., Lenstra, J.A., Kijas, J., Meng-Hua Li
Published 2021-03-09

Large-scale genomic analysis reveals the genetic cost of chicken domestication

by Ming-Shan Wang, Jin-Jin Zhang, Xing Guo, Ming Li, Meyer, R., Ashari, H., Zhu-Qing Zheng, Sheng Wang, Min-Sheng Peng, Yu Jiang, Mukesh Thakur, Chatmongkon Suwannapoom, Esmailizadeh, A., Nalini Yasoda Hirimuthugoda, Moch Syamsul Arifin Zein, Kusza, S., Hamed Kharrati-Koopaee, Lin Zeng, Yun-Mei Wang, Ting-Ting Yin, Min-Min Yang, Ming-Li Li, Xue-Mei Lu, Lasagna, E., Ceccobelli, S., Humpita Gamaralalage Thilini Nisanka Gunwardana, Thilina Madusanka Senasig, Shao-Hong Feng, Hao Zhang, Bhuiyan, A.K.F.H., Khan, M.S., Gamamada Liyanage Lalanie Pradeepa Silva, Le Thi Thuy, Okeyo Mwai, Ally, Ibrahim, M.N.M., Guojie Zhang, Kai-Xing Qu, Hanotte, Olivier H., Shapiro, B., Bosse, M., Dong-Dong Wu, Han Jianlin, Ya-Ping Zhang
Published 2021-12

Paternal origins and migratory episodes of domestic sheep

by Juan Deng, Xing-Long Xie, Dong-Feng Wang, Chao Zhao, Feng-Hua Lv, Xin Li, Ji Yang, Jia-Lin Yu, Min Shen, Lei Gao, Jing-Quan Yang, Ming-Jun Liu, Wen-Rong Li, Yu-Tao Wang, Feng Wang, Jin-Quan Li, EEr Hehua, Yong-Gang Liu, Zhi-Qiang Shen, Yan-Ling Ren, Guang-Jian Liu, Ze-Hui Chen, Gorkhali, N.A., Rushdi, H.E., Salehian-Dehkordi, H., Esmailizadeh, A., Nosrati, M., Paiva, S.R., Caetano, A.R., Stepanek, O., Olsaker, I., Weimann, C., Erhardt, G., Curik, I., Kantanen, J., Mwacharo, Joram M., Hanotte, Olivier H., Bruford, M.W., Ciani, E., Periasamy, K., Amills, M., Lenstra, J.A., Han Jianlin, Hong-Ping Zhang, Li Li, Meng-Hua Li
Published 2020-10

Global genetic diversity, introgression, and evolutionary adaptation of indicine cattle revealed by whole genome sequencing

by Ningbo Chen, Xiaoting Xia, Quratulain Hanif, Fengwei Zhang, Ruihua Dang, Bizhi Huang, Yang Lyu, Xiaoyu Luo, Hucai Zhang, Huixuan Yan, Shikang Wang, Fuwen Wang, Jialei Chen, Xiwen Guan, Yangkai Liu, Shuang Li, Liangliang Jin, Pengfei Wang, Luyang Sun, Jicai Zhang, Jianyong Liu, Kaixing Qu, Yanhong Cao, Junli Sun, Yuying Liao, Zhengzhong Xiao, Ming Cai, Lan Mu, Amam Zonaed Siddiki, Zonaed Siddiki, Amam, Asif, Muhammad, Mansoor, Shahid, Babar, M.E., Hussain, Tanveer, Silva, G.L.L.P., Gorkhali, N.A., Terefe, E., Belay, G., Tijjani, Abdulfatai, Zegeye, T., Gebre, M., Yun Ma, Yu Wang, Yongzhen Huang, Xianyong Lan, Hong Chen, Migliore, N.R., Colombo, G., Semino, O., Achilli, A., Sinding, M.-H.S., Lenstra, J.A., Haijian Cheng, Wenfa Lu, Hanotte, Olivier H., Jianlin Han, Yu Jiang, Chuzhao Lei
Published 2023

Whole-genome resequencing of worldwide wild and domestic sheep elucidates genetic diversity, introgression and agronomically important loci

by Feng-Hua Lv, Yin-Hong Cao, Guang-Jian Liu, Ling-Yun Luo, Ran Lu, Ming-Jun Liu, Wen-Rong Li, Ping Zhou, Xin-Hua Wang, Min Shen, Lei Gao, Jing-Quan Yang, Hua Yang, Yong-Lin Yang, Chang-Bin Liu, Peng-Cheng Wan, Yun-Sheng Zhang, Wen-Hui Pi, Yan-Ling Ren, Zhi-Qiang Shen, Feng Wang, Yu-Tao Wang, Jin-Quan Li, Salehian-Dehkordi, H., Eer Hehua, Yong-Gang Liu, Jian-Fei Chen, Jian-Kui Wang, Xue-Mei Deng, Esmailizadeh, A., Dehghani-Antezana, M., Charati, H., Nosrati, M., Štěpánek, O., Rushdi, H.E., Olsaker, I., Curik, I., Gorkhali, N.A., Paiva, S.R., Caetano, A.R., Ciani, E., Amills, M., Weimann, C., Erhardt, G., Amane, A., Mwacharo, Joram M., Han Jianlin, Hanotte, Olivier H., Periasamy, K., Johansson, A.M., Hallsson, J.H., Kantanen, J., Coltman, D.W., Bruford, M.W., Lenstra, J.A., Meng-Hua Li
Published 2022-02-03

863 genomes reveal the origin and domestication of chicken

by Ming-Shan Wang, Thakur, M., Min-Sheng Peng, Yu Jiang, Frantz, L.A.F., Ming Li, Jin-Jin Zhang, Sheng Wang, Peters, J., Otecko, N.O., Suwannapoom, Chatmongkon, Xing Guo, Zhu-Qing Zheng, Esmailizadeh, A., Hirimuthugoda, N.Y., Ashari, H., Suladari, S., Syamsu, M., Zein, A., Kusza, S., Sohrabi, S., Kharrati-Koopaee, H., Quan-Kuan Shen, Lin Zeng, Min-Min Yang, Ya-Jiang Yu, Xing-Yan Yang, Xue-Mei Lu, Xin-Zheng Jia, Qing-Hua Nie, Lamont, S.J., Lasagna, E., Ceccobelli, S., Gunwardana, H.G.T.N., Senasige, T.M., Shao-Hong Feng, Jing-Fang Si, Hao Zhang, Jie-Qiong Jin, Ming-Li Li, Yan-Hu Liu, Hong-Man Chen, Cheng Ma, Shan-Shan Dai, Bhuiyan, A.K.F.H., Khan, M.S., Pradeepa Silva, G.L.L., Thi-Thuy Le, Okeyo Mwai, Ally, Ibrahim, Mohamed N.M., Supple, M., Shapiro, B., Hanotte, Olivier H., Guoji Zhang, Larson, G., Han Jianlin, Dong-Dong Wu, Ya-Ping Zhang
Published 2020-06-25

Fourth Report on Chicken Genes and Chromosomes 2022

by Alfieri, James M., Anthony, Nck, Arensburger, Peter, Athrey, Giridhar N., Balacco, Jennifer, Balic, Adam, Bardou, Philippe, Barela, Paul, Bigot, Yves, Blackmon, Heath, Borodin, Pavel M., Carroll, Rachel, Casono, Meya C., Charles, Mathieu, Cheng, Hans, Chiodi, Maddie, Cigan, Lacey, Coghill, Lyndon M., Crooijmans, Richard, Das, Neelabja, Davey, Sean, Davidian, Asya, Degalez, Fabien, Dekkers, Jack M., Derks, Martijn, Diack, Abigail B., Djikeng, Appolinaire, Drechsler, Yvonne Drechsler, Dyomin, Alexander, Fedrigo, Olivier, Fiddaman, Steven R., Formenti, Giulio, Frantz, , Laurent A.F., Fulton, Janet E., Gaginskaya, Elena, Galkina, Svetlana, Gallardo, Rodrigo A., Geibel, Johannes, Gheyas, Almas, Godinez, Cyrill John P., Goodell, Ashton, Graves, Jennifer A.M., Griffin, Darren K., Haase, Bettina, Han Jianlin, Hanotte, Olivier H., Henderson, Lindsay J., Zhuo-Cheng Hou, Howe, Kerstin Howe, Lan Huynh, Ilatsia, Evans, Jarvis, Erich, Johnson, Sarah M., Kaufman, Jim, Kelly, Terra, Kemp Stephen J., Kern, Colin, Keroack, Jacob H., Klopp, Christophe, Lagarrigue, Sandrine, Lamont, Susan J., Lange, Margaret, Lanke, Anika, Larkin, Denis M., Larson, Greger, Layos, John King N., Lebrasseur, Ophélie, Malinovskaya, Lyubov P., Martin, Rebecca J., Martin Cerezo, Maria Luisa, Mason, Andrew S., McCarthy, Fiona M., McGrew, Michael J., Mountcastle, Jacquelyn, Muhonja, Christine Kamidi, Muir, William, Muret, Kévin, Murphy, Terence, Ng'ang'a, Ismael, Nishibori, Masahide, O'Connor, Rebecca E., Ogugo, Moses, Okimoto, Ron, Ouko, Ochieng, Patel, Hardip R. Patel, Perini, Francesco, Pigozzi, María Inés, Potter, Krista C., Price, Peter D., Reimer, Christian, Rice, Edward S., Rocos, Nicolas, Rogers, Thea F., Saelao, Perot, Schauer, Jens, Schnabel, Robert, Schneider, Valerie, Simianer, Henner, Smith, Adrian, Stevens, Mark P., Stiers, Kyle, Tiambo, Christian Keambou, Tixier-Boichard, Michele, Torgasheva, Anna A., Tracey, Alan, Tregaskes, Clive A., Vervelde, Lonneke, Ying Wang, Warren, Wesley C., Waters, Paul D. Waters, Webb, David, Weigend, Steffen, Wolc, Anna, Wright, Alison E., Wright, Dominic, Zhou Wu, Yamagata, Masahito, Chentao Yang, Zhong-Tao Yin, Young, Michelle C., Guojie Zhang, Bingru Zhao, Huaijun Zhou
Published 2022